Variant report

Variant	rs12261999
Chromosome Location	chr10:98101481-98101482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11188729	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188730	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11188731	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs11188737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242936	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12244618	1.00[AMR][1000 genomes]
rs12253096	1.00[YRI][hapmap]
rs12254673	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262883	1.00[YRI][hapmap]
rs12266939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269568	1.00[AMR][1000 genomes]
rs12571241	1.00[YRI][hapmap]
rs2901989	1.00[YRI][hapmap]
rs3814224	1.00[YRI][hapmap]
rs9651412	1.00[YRI][hapmap]
rs9651413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9971056	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98098000-98101600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:98098400-98101600	Enhancers	Brain Hippocampus Middle	brain
3	chr10:98098400-98101600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:98099200-98101600	Enhancers	Brain Substantia Nigra	brain
5	chr10:98099600-98102000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:98099800-98101600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:98099800-98101800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:98100000-98103600	Weak transcription	Fetal Thymus	thymus
9	chr10:98100200-98103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:98100200-98104200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:98100400-98101600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:98100800-98101600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:98100800-98101600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:98100800-98101600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:98100800-98101600	Enhancers	Brain Angular Gyrus	brain
16	chr10:98100800-98104000	Strong transcription	Dnd41	blood
17	chr10:98100800-98105000	Strong transcription	Thymus	Thymus
18	chr10:98101000-98102000	Enhancers	GM12878-XiMat	blood
19	chr10:98101200-98101600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:98101200-98101600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:98101200-98101600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:98101200-98101600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:98101200-98101800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr10:98101200-98103800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:98101400-98101600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr10:98101400-98105600	Weak transcription	Brain Anterior Caudate	brain
27	chr10:98101400-98105600	Weak transcription	Brain Cingulate Gyrus	brain

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