Variant report

Variant	rs12570008
Chromosome Location	chr10:98119681-98119682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs10882767	1.00[CEU][hapmap]
rs11188710	1.00[CEU][hapmap]
rs11188724	0.81[JPT][hapmap]
rs11188725	0.81[JPT][hapmap]
rs11188731	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12242936	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12411642	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12412600	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12413089	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12571241	0.81[JPT][hapmap]
rs12572329	0.81[JPT][hapmap]
rs12572610	1.00[CEU][hapmap]
rs17111540	1.00[CEU][hapmap]
rs17111736	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1923702	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2146385	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MKK][hapmap]
rs2146393	0.81[JPT][hapmap]
rs2273892	1.00[CEU][hapmap]
rs28384391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901989	0.81[JPT][hapmap]
rs3789939	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs3814224	0.81[JPT][hapmap]
rs7072251	0.88[GIH][hapmap]
rs734225	1.00[CEU][hapmap]
rs734226	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs7896766	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98117000-98123800	Weak transcription	Right Atrium	heart
3	chr10:98117000-98134400	Weak transcription	Thymus	Thymus
4	chr10:98118800-98119800	Flanking Active TSS	Brain Hippocampus Middle	brain
5	chr10:98118800-98130200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:98119200-98121200	Enhancers	Brain Anterior Caudate	brain
7	chr10:98119400-98120400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr10:98119400-98120400	Enhancers	Brain Substantia Nigra	brain
9	chr10:98119600-98120000	Enhancers	Brain Angular Gyrus	brain
10	chr10:98119600-98121200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links