Variant report

Variant	rs12569756
Chromosome Location	chr10:98081531-98081532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10786276	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882767	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11188710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188731	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12242936	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12411642	0.81[EUR][1000 genomes]
rs12411820	0.82[AMR][1000 genomes]
rs12412600	0.81[EUR][1000 genomes]
rs12413089	0.81[EUR][1000 genomes]
rs12414495	0.82[AMR][1000 genomes]
rs12414529	0.82[AMR][1000 genomes]
rs12570008	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12572610	1.00[CEU][hapmap]
rs12573362	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17111540	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs17111736	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17111753	0.81[EUR][1000 genomes]
rs1902704	0.86[JPT][hapmap]
rs2146385	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2273892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28384391	0.81[EUR][1000 genomes]
rs2861306	0.86[JPT][hapmap]
rs3762093	0.80[AMR][1000 genomes]
rs3789939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4917730	0.95[JPT][hapmap]
rs4919000	0.86[JPT][hapmap]
rs6584061	0.86[JPT][hapmap]
rs6584064	1.00[JPT][hapmap]
rs67425977	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7072251	1.00[JPT][hapmap]
rs7074775	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72637514	0.82[AMR][1000 genomes]
rs72637515	0.82[AMR][1000 genomes]
rs72637516	0.82[AMR][1000 genomes]
rs72640001	0.84[AMR][1000 genomes]
rs734225	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs734226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7896766	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs941996	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98072000-98081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:98077800-98089600	Strong transcription	Dnd41	blood
4	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
5	chr10:98080200-98085000	Weak transcription	GM12878-XiMat	blood
6	chr10:98080400-98081600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:98080400-98083600	Strong transcription	Fetal Thymus	thymus
8	chr10:98080400-98089200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:98081000-98082000	Enhancers	Right Atrium	heart
10	chr10:98081400-98081600	Enhancers	HUES48 Cell Line	embryonic stem cell

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