Variant report

Variant	rs67425977
Chromosome Location	chr10:98068381-98068382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98067037..98069492-chr10:98071586..98073914,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10509707	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10786276	0.91[ASN][1000 genomes]
rs10882767	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10882768	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11188699	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11188710	0.91[ASN][1000 genomes]
rs12257639	0.87[AMR][1000 genomes]
rs12569756	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12573362	0.88[ASN][1000 genomes]
rs2069238	0.83[ASN][1000 genomes]
rs2146385	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2146391	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2273892	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3789939	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3789940	0.88[ASN][1000 genomes]
rs41291614	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57519557	0.82[AMR][1000 genomes]
rs7069190	0.81[ASN][1000 genomes]
rs7074775	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7078316	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7083595	0.85[ASN][1000 genomes]
rs7091809	0.81[ASN][1000 genomes]
rs72640001	0.81[ASN][1000 genomes]
rs734225	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs734226	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7905402	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7919557	0.83[AMR][1000 genomes]
rs7919799	0.81[ASN][1000 genomes]
rs7922788	0.81[ASN][1000 genomes]
rs941996	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs941998	0.81[ASN][1000 genomes]
rs941999	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98064200-98069400	Active TSS	Thymus	Thymus
2	chr10:98065200-98068800	Weak transcription	Right Atrium	heart
3	chr10:98066400-98070000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:98066400-98072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:98066600-98068800	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:98066600-98071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:98066800-98069200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:98066800-98071000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:98066800-98072000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:98067000-98072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:98067200-98070400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
14	chr10:98067400-98070400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr10:98067600-98069000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:98067600-98072400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr10:98067800-98069200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr10:98067800-98071000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:98067800-98071200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:98068000-98068400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr10:98068000-98068400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr10:98068000-98069200	Transcr. at gene 5' and 3'	Dnd41	blood
23	chr10:98068000-98070400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:98068000-98070600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:98068200-98068600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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