Variant report

Variant	rs7919557
Chromosome Location	chr10:98007326-98007327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10509707	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1075834	0.82[ASN][1000 genomes]
rs10786273	0.86[ASN][1000 genomes]
rs10882761	0.84[ASN][1000 genomes]
rs10882765	0.85[ASN][1000 genomes]
rs10882767	0.89[AMR][1000 genomes]
rs10882768	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188699	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12257639	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12411820	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12414495	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12414529	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17111536	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111540	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2146391	0.87[AMR][1000 genomes]
rs2168732	0.91[ASN][1000 genomes]
rs2861306	0.82[ASN][1000 genomes]
rs2861308	0.82[ASN][1000 genomes]
rs3762093	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762094	0.90[ASN][1000 genomes]
rs3789929	0.93[ASN][1000 genomes]
rs3789930	0.90[ASN][1000 genomes]
rs3789933	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789934	0.82[ASN][1000 genomes]
rs41291614	0.91[AMR][1000 genomes]
rs4919000	0.83[ASN][1000 genomes]
rs4919001	0.82[ASN][1000 genomes]
rs57519557	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6584061	0.82[ASN][1000 genomes]
rs67425977	0.83[AMR][1000 genomes]
rs7076424	0.82[ASN][1000 genomes]
rs7078316	0.91[AMR][1000 genomes]
rs7085174	0.87[ASN][1000 genomes]
rs7099796	0.83[ASN][1000 genomes]
rs72637514	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72637515	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72637516	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72640001	0.82[AMR][1000 genomes]
rs7894128	0.88[ASN][1000 genomes]
rs7905402	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7905645	0.90[ASN][1000 genomes]
rs7922788	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8181290	0.82[ASN][1000 genomes]
rs941999	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9663433	0.90[ASN][1000 genomes]
rs9664029	0.90[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97952000-98010200	Weak transcription	Fetal Kidney	kidney
2	chr10:97994400-98009000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:97996200-98009000	Weak transcription	Gastric	stomach
4	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
5	chr10:98002000-98008200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:98002000-98009200	Weak transcription	Spleen	Spleen
7	chr10:98002000-98015400	Weak transcription	Esophagus	oesophagus
8	chr10:98002800-98008400	Weak transcription	Stomach Mucosa	stomach
9	chr10:98003400-98009000	Weak transcription	Pancreas	Pancrea
10	chr10:98004400-98009400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:98004600-98009200	Weak transcription	Small Intestine	intestine
12	chr10:98004600-98009400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:98004600-98009800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:98004800-98007800	Strong transcription	Liver	Liver
15	chr10:98005000-98019000	Weak transcription	Colonic Mucosa	Colon
16	chr10:98005200-98007600	Strong transcription	Primary B cells from cord blood	blood
17	chr10:98005600-98007400	Strong transcription	GM12878-XiMat	blood
18	chr10:98006400-98007800	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr10:98006600-98008400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:98006800-98011200	Enhancers	Fetal Intestine Large	intestine
21	chr10:98007200-98009000	Genic enhancers	Primary B cells from peripheral blood	blood
22	chr10:98007200-98018800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links