Variant report

Variant	rs12411820
Chromosome Location	chr10:98018866-98018867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98011501..98013268-chr10:98017760..98019968,2	MCF-7	breast:
2	chr10:98018546..98020304-chr10:98024707..98027759,3	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1075834	0.89[ASN][1000 genomes]
rs10882765	0.89[ASN][1000 genomes]
rs10882767	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10882768	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188699	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11188710	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs11188731	1.00[CEU][hapmap]
rs12242936	1.00[CEU][hapmap]
rs12250473	0.85[ASN][1000 genomes]
rs12257639	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12414495	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12414529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs12570008	1.00[CEU][hapmap]
rs12572610	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17111536	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17111736	1.00[CEU][hapmap]
rs1902704	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2069238	0.85[ASN][1000 genomes]
rs2146385	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes]
rs2146391	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2168732	0.83[ASN][1000 genomes]
rs2273892	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs2861306	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2861308	0.89[ASN][1000 genomes]
rs3762093	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3762094	0.84[ASN][1000 genomes]
rs3789929	0.87[ASN][1000 genomes]
rs3789930	0.84[ASN][1000 genomes]
rs3789933	0.96[ASN][1000 genomes]
rs3789934	0.91[ASN][1000 genomes]
rs3789939	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs3789940	0.82[JPT][hapmap]
rs41291614	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4917730	0.82[JPT][hapmap]
rs4919000	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4919001	0.89[ASN][1000 genomes]
rs57519557	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6584061	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6584064	0.86[JPT][hapmap]
rs7069190	0.85[ASN][1000 genomes]
rs7072251	0.86[JPT][hapmap]
rs7076424	0.91[ASN][1000 genomes]
rs7078316	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7083595	0.83[ASN][1000 genomes]
rs7085174	0.81[ASN][1000 genomes]
rs7091809	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7099796	0.88[ASN][1000 genomes]
rs72637514	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72637515	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72637516	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72640001	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs734225	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs734226	1.00[CEU][hapmap]
rs7894128	0.82[ASN][1000 genomes]
rs7896766	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7905402	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7905645	0.84[ASN][1000 genomes]
rs7919557	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919799	0.85[ASN][1000 genomes]
rs7922788	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8181290	0.91[ASN][1000 genomes]
rs941998	0.85[ASN][1000 genomes]
rs941999	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9663433	0.84[ASN][1000 genomes]
rs9664029	0.84[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98005000-98019000	Weak transcription	Colonic Mucosa	Colon
3	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
4	chr10:98011200-98019000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr10:98015400-98026200	Genic enhancers	Primary B cells from cord blood	blood
7	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:98015800-98023200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:98015800-98026200	Weak transcription	Esophagus	oesophagus
10	chr10:98016000-98019200	Weak transcription	Placenta	Placenta
11	chr10:98016000-98023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:98016400-98019800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:98016800-98019000	Enhancers	Pancreas	Pancrea
14	chr10:98016800-98019000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
15	chr10:98016800-98019800	Enhancers	Spleen	Spleen
16	chr10:98017000-98019200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:98017000-98024400	Enhancers	Stomach Mucosa	stomach
18	chr10:98017600-98019000	Weak transcription	Fetal Intestine Large	intestine
19	chr10:98017600-98019200	Genic enhancers	Fetal Intestine Small	intestine
20	chr10:98017800-98019000	Weak transcription	Left Ventricle	heart
21	chr10:98018000-98019000	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:98018000-98019600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:98018000-98021600	Weak transcription	Right Atrium	heart
24	chr10:98018200-98019600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr10:98018400-98019000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:98018400-98019400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:98018400-98019600	Weak transcription	Adipose Nuclei	Adipose
28	chr10:98018400-98019600	Weak transcription	Liver	Liver
29	chr10:98018600-98019600	Weak transcription	Gastric	stomach
30	chr10:98018600-98019800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:98018800-98019000	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr10:98018800-98019400	Enhancers	Lung	lung
33	chr10:98018800-98020000	Enhancers	Duodenum Mucosa	Duodenum
34	chr10:98018800-98020400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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