Variant report

Variant	rs7922788
Chromosome Location	chr10:98046586-98046587
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97887876..97891443-chr10:98043878..98046637,3	MCF-7	breast:
2	chr10:98042724..98044710-chr10:98045849..98048382,2	K562	blood:
3	chr10:98046170..98047854-chr10:98073375..98075159,2	MCF-7	breast:
4	chr10:98029277..98032008-chr10:98042725..98046878,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10509707	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882767	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882768	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188699	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12250473	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12257639	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12411820	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12414495	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12414529	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12572610	0.90[EUR][1000 genomes]
rs17111536	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17111540	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1902704	0.80[ASN][1000 genomes]
rs2069238	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146385	0.80[ASN][1000 genomes]
rs2146391	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789933	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs41291614	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4917730	0.90[ASN][1000 genomes]
rs57519557	0.84[AMR][1000 genomes]
rs6584064	0.92[ASN][1000 genomes]
rs67425977	0.81[ASN][1000 genomes]
rs7069190	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7072251	0.91[ASN][1000 genomes]
rs7078316	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7083595	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7091809	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72637514	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72637515	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72637516	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72640001	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896766	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7905402	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919557	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7919588	0.91[ASN][1000 genomes]
rs7919799	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs941998	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs941999	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:98041600-98047000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:98041600-98047000	Weak transcription	NHEK	skin
4	chr10:98043400-98047400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:98043600-98047000	Weak transcription	HMEC	breast
6	chr10:98044800-98047200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:98044800-98047400	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:98044800-98047400	Enhancers	Fetal Intestine Large	intestine
9	chr10:98045000-98047000	Enhancers	Duodenum Mucosa	Duodenum
10	chr10:98045000-98047400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:98045200-98047000	Enhancers	Fetal Kidney	kidney
12	chr10:98045200-98047200	Enhancers	Liver	Liver
13	chr10:98045200-98047400	Enhancers	Fetal Intestine Small	intestine
14	chr10:98045400-98047000	Weak transcription	Placenta	Placenta
15	chr10:98045400-98048000	Weak transcription	Gastric	stomach
16	chr10:98045400-98048200	Enhancers	Colonic Mucosa	Colon
17	chr10:98045600-98047000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:98045600-98047000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:98045600-98047000	Weak transcription	Small Intestine	intestine
20	chr10:98045600-98047200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:98045600-98047600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:98045600-98049800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:98045600-98052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:98045600-98053000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:98045800-98047000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:98046200-98047400	Enhancers	Pancreas	Pancrea
27	chr10:98046200-98048400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:98046400-98046600	Enhancers	Spleen	Spleen
29	chr10:98046400-98047000	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:98046400-98047400	Flanking Active TSS	GM12878-XiMat	blood
31	chr10:98046400-98047600	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr10:98046400-98047600	Enhancers	Stomach Mucosa	stomach
33	chr10:98046400-98047800	Enhancers	Colon Smooth Muscle	Colon
34	chr10:98046400-98048600	Enhancers	Dnd41	blood

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