Variant report

Variant	rs12250473
Chromosome Location	chr10:98027527-98027528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98018546..98020304-chr10:98024707..98027759,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882767	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10882768	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188699	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188710	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs11188731	1.00[CEU][hapmap]
rs12242936	1.00[CEU][hapmap]
rs12257639	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12411820	0.85[ASN][1000 genomes]
rs12414495	0.85[ASN][1000 genomes]
rs12414529	0.84[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs12570008	1.00[CEU][hapmap]
rs12572610	1.00[CEU][hapmap]
rs12573362	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs17111536	0.85[ASN][1000 genomes]
rs17111540	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs17111736	1.00[CEU][hapmap]
rs1902704	0.83[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap]
rs2069238	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146385	1.00[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap]
rs2146391	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2273892	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2861306	0.90[JPT][hapmap]
rs3789933	0.82[ASN][1000 genomes]
rs3789939	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap]
rs3789940	0.83[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap]
rs41291614	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4917730	0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4919000	0.83[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap]
rs6584061	0.90[JPT][hapmap]
rs6584064	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs7069190	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7072251	0.82[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs7078316	0.89[ASN][1000 genomes]
rs7083595	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7091809	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72637514	0.85[ASN][1000 genomes]
rs72637515	0.85[ASN][1000 genomes]
rs72637516	0.86[ASN][1000 genomes]
rs72640001	0.92[ASN][1000 genomes]
rs734225	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs734226	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs7896766	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7905402	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919588	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7919799	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7922788	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs941998	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs941999	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98019800-98028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:98020000-98029400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:98021000-98029800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
5	chr10:98023600-98031800	Weak transcription	Small Intestine	intestine
6	chr10:98023800-98032000	Weak transcription	Spleen	Spleen
7	chr10:98024600-98029200	Weak transcription	Placenta	Placenta
8	chr10:98025400-98029400	Enhancers	Stomach Mucosa	stomach
9	chr10:98025600-98027600	Enhancers	Pancreas	Pancrea
10	chr10:98025800-98028600	Weak transcription	Fetal Kidney	kidney
11	chr10:98026000-98027600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:98026000-98027800	Enhancers	HMEC	breast
13	chr10:98026200-98027600	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
14	chr10:98026200-98027600	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr10:98026200-98029000	Flanking Active TSS	Liver	Liver
16	chr10:98026200-98033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:98026400-98028200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:98026400-98028200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:98026600-98027600	Enhancers	NHEK	skin
20	chr10:98026600-98027800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr10:98026800-98028000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:98026800-98028200	Weak transcription	Esophagus	oesophagus
23	chr10:98026800-98029000	Enhancers	Fetal Intestine Large	intestine
24	chr10:98026800-98029200	Enhancers	Fetal Intestine Small	intestine
25	chr10:98027000-98029200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
26	chr10:98027200-98028200	Weak transcription	Colonic Mucosa	Colon
27	chr10:98027400-98028000	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr10:98027400-98028200	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:98027400-98028200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr10:98027400-98029200	Weak transcription	Gastric	stomach
31	chr10:98027400-98030800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:98027400-98031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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