Variant report

Variant	rs6584064
Chromosome Location	chr10:98046232-98046233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97887876..97891443-chr10:98043878..98046637,3	MCF-7	breast:
2	chr10:98042724..98044710-chr10:98045849..98048382,2	K562	blood:
3	chr10:98046170..98047854-chr10:98073375..98075159,2	MCF-7	breast:
4	chr10:98029277..98032008-chr10:98042725..98046878,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10509707	0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1075834	0.84[ASN][1000 genomes]
rs10882765	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882767	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10882768	0.91[ASN][1000 genomes]
rs11188699	0.91[ASN][1000 genomes]
rs11188710	0.95[JPT][hapmap]
rs12250473	0.83[ASN][1000 genomes]
rs12257639	0.87[ASN][1000 genomes]
rs12569756	1.00[JPT][hapmap]
rs12573362	0.91[JPT][hapmap]
rs17111540	0.86[JPT][hapmap]
rs1902704	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2069238	0.90[ASN][1000 genomes]
rs2146385	1.00[JPT][hapmap]
rs2146391	0.91[ASN][1000 genomes]
rs2273892	0.95[JPT][hapmap]
rs2861306	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2861308	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3789934	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3789939	0.95[JPT][hapmap]
rs3789940	0.95[JPT][hapmap]
rs41291614	0.88[ASN][1000 genomes]
rs4917730	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919000	1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4919001	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6584061	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7069190	0.91[ASN][1000 genomes]
rs7072251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076424	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7078316	0.88[ASN][1000 genomes]
rs7083595	0.88[ASN][1000 genomes]
rs7091809	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7099796	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72640001	0.91[ASN][1000 genomes]
rs734225	0.95[JPT][hapmap]
rs734226	0.91[JPT][hapmap]
rs7896766	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7905402	0.92[ASN][1000 genomes]
rs7919588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7919799	0.91[ASN][1000 genomes]
rs7922788	0.92[ASN][1000 genomes]
rs8181290	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs941997	0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs941998	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs941999	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:98039200-98046400	Weak transcription	Stomach Mucosa	stomach
3	chr10:98041600-98047000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:98041600-98047000	Weak transcription	NHEK	skin
5	chr10:98043400-98046400	Weak transcription	Spleen	Spleen
6	chr10:98043400-98047400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:98043600-98046400	Enhancers	Primary B cells from cord blood	blood
8	chr10:98043600-98047000	Weak transcription	HMEC	breast
9	chr10:98044800-98046400	Enhancers	GM12878-XiMat	blood
10	chr10:98044800-98047200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr10:98044800-98047400	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:98044800-98047400	Enhancers	Fetal Intestine Large	intestine
13	chr10:98045000-98047000	Enhancers	Duodenum Mucosa	Duodenum
14	chr10:98045000-98047400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr10:98045200-98047000	Enhancers	Fetal Kidney	kidney
16	chr10:98045200-98047200	Enhancers	Liver	Liver
17	chr10:98045200-98047400	Enhancers	Fetal Intestine Small	intestine
18	chr10:98045400-98047000	Weak transcription	Placenta	Placenta
19	chr10:98045400-98048000	Weak transcription	Gastric	stomach
20	chr10:98045400-98048200	Enhancers	Colonic Mucosa	Colon
21	chr10:98045600-98046400	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:98045600-98046400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:98045600-98047000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:98045600-98047000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:98045600-98047000	Weak transcription	Small Intestine	intestine
26	chr10:98045600-98047200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:98045600-98047600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:98045600-98049800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:98045600-98052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:98045600-98053000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:98045800-98047000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:98046200-98047400	Enhancers	Pancreas	Pancrea
33	chr10:98046200-98048400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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