Variant report

Variant	rs7078316
Chromosome Location	chr10:98058369-98058370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10509707	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882767	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882768	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188699	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12250473	0.89[ASN][1000 genomes]
rs12257639	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12411820	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12414495	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414529	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12572610	0.87[EUR][1000 genomes]
rs17111536	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17111540	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2069238	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2146385	0.84[ASN][1000 genomes]
rs2146391	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762093	0.81[AMR][1000 genomes]
rs3789933	0.81[AMR][1000 genomes]
rs3789939	0.80[AMR][1000 genomes]
rs41291614	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917730	0.87[ASN][1000 genomes]
rs57519557	0.92[AMR][1000 genomes]
rs6584064	0.88[ASN][1000 genomes]
rs67425977	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7069190	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7072251	0.87[ASN][1000 genomes]
rs7074775	0.80[AMR][1000 genomes]
rs7083595	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091809	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637514	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72637515	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72637516	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72640001	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7896766	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7905402	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7919557	0.91[AMR][1000 genomes]
rs7919588	0.88[ASN][1000 genomes]
rs7919799	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7922788	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs941998	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs941999	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98048600-98058800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:98050600-98059200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98052800-98058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98053200-98059200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:98055200-98061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:98055800-98058600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:98055800-98058600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:98055800-98058800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:98055800-98059200	Weak transcription	GM12878-XiMat	blood
10	chr10:98056200-98058800	Weak transcription	Primary B cells from cord blood	blood
11	chr10:98056800-98059000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:98056800-98062800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:98057000-98059600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr10:98057200-98061800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:98057400-98058600	Genic enhancers	Dnd41	blood
16	chr10:98057400-98060000	Flanking Active TSS	Thymus	Thymus
17	chr10:98057400-98061200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:98057400-98062000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:98057600-98063800	Enhancers	Fetal Thymus	thymus
20	chr10:98057800-98058400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:98057800-98058600	Weak transcription	Brain Germinal Matrix	brain
22	chr10:98057800-98060200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:98058000-98061400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr10:98058200-98058600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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