Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509707	0.82[AMR][1000 genomes]
rs10786276	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882768	0.82[AMR][1000 genomes]
rs11188699	0.82[AMR][1000 genomes]
rs11188710	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257639	0.82[AMR][1000 genomes]
rs12569756	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12573362	0.97[ASN][1000 genomes]
rs2146385	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2273892	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3789939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789940	0.97[ASN][1000 genomes]
rs41291614	0.80[AMR][1000 genomes]
rs67425977	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7078316	0.80[AMR][1000 genomes]
rs734225	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs734226	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7905402	0.82[AMR][1000 genomes]
rs941996	0.98[ASN][1000 genomes]
rs941999	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98071000-98080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:98072000-98081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:98077800-98089600	Strong transcription	Dnd41	blood
5	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
6	chr10:98079200-98080000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:98079400-98080600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr10:98079600-98080000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr10:98079600-98080200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr10:98079600-98080200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:98079600-98080400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:98079600-98080400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:98079600-98080400	Genic enhancers	Fetal Thymus	thymus
14	chr10:98079800-98080200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:98079800-98080200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr10:98079800-98080200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:98079800-98080200	Enhancers	GM12878-XiMat	blood
18	chr10:98079800-98080400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:98079800-98080400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:98079800-98080400	Enhancers	A549	lung

Quick Search: