Variant report

Variant	rs2146385
Chromosome Location	chr10:98070849-98070850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[ASN][1000 genomes]
rs10786276	0.92[ASN][1000 genomes]
rs10882767	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10882768	0.81[ASN][1000 genomes]
rs11188699	0.81[ASN][1000 genomes]
rs11188710	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11188731	1.00[CEU][hapmap]
rs12242936	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs12411820	0.86[AMR][1000 genomes]
rs12414495	0.86[AMR][1000 genomes]
rs12414529	0.86[AMR][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12570008	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MKK][hapmap]
rs12572610	1.00[CEU][hapmap]
rs12573362	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17111540	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes]
rs17111736	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MKK][hapmap]
rs1902704	0.84[GIH][hapmap];0.86[JPT][hapmap]
rs2069238	0.82[ASN][1000 genomes]
rs2146391	0.81[ASN][1000 genomes]
rs2273892	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2861306	0.85[JPT][hapmap]
rs3762093	0.84[AMR][1000 genomes]
rs3789939	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3789940	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.89[ASN][1000 genomes]
rs41291614	0.84[ASN][1000 genomes]
rs4917730	0.95[JPT][hapmap]
rs4919000	0.86[JPT][hapmap]
rs6584061	0.86[JPT][hapmap]
rs6584064	1.00[JPT][hapmap]
rs67425977	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069190	0.80[ASN][1000 genomes]
rs7072251	0.84[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs7074775	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7078316	0.84[ASN][1000 genomes]
rs7083595	0.84[ASN][1000 genomes]
rs7091809	0.80[ASN][1000 genomes]
rs72637514	0.86[AMR][1000 genomes]
rs72637515	0.86[AMR][1000 genomes]
rs72637516	0.86[AMR][1000 genomes]
rs72640001	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs734225	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs734226	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7896766	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7905402	0.80[ASN][1000 genomes]
rs7919799	0.80[ASN][1000 genomes]
rs7922788	0.80[ASN][1000 genomes]
rs941996	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs941998	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98066400-98072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:98066600-98071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:98066800-98071000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:98066800-98072000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:98067000-98072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
8	chr10:98067600-98072400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:98067800-98071000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:98067800-98071200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:98068600-98071200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:98068800-98071200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:98069600-98071200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:98069600-98072400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:98070200-98071000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr10:98070400-98071000	Enhancers	Dnd41	blood
17	chr10:98070400-98071800	Active TSS	Thymus	Thymus
18	chr10:98070400-98072400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:98070400-98079800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:98070800-98071000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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