Variant report

Variant	rs4919000
Chromosome Location	chr10:98021531-98021532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98015434..98017077-chr10:98020003..98022495,3	MCF-7	breast:
2	chr10:98020465..98023653-chr10:98029291..98031545,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10509707	0.86[JPT][hapmap]
rs1075834	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882761	0.87[ASN][1000 genomes]
rs10882765	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882767	0.86[JPT][hapmap]
rs11188710	0.82[JPT][hapmap]
rs11591319	0.85[AFR][1000 genomes]
rs12411820	0.90[ASN][1000 genomes]
rs12414495	0.89[ASN][1000 genomes]
rs12414529	0.89[ASN][1000 genomes]
rs12569756	0.86[JPT][hapmap]
rs17111536	0.91[ASN][1000 genomes]
rs17111540	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1902704	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146385	0.86[JPT][hapmap]
rs2273892	0.82[JPT][hapmap]
rs2861306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2861308	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762093	0.83[ASN][1000 genomes]
rs3762094	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789930	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789933	0.87[ASN][1000 genomes]
rs3789934	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789939	0.82[JPT][hapmap]
rs3789940	0.82[JPT][hapmap]
rs4917730	0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4919001	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57519557	0.82[ASN][1000 genomes]
rs6584061	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6584064	1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7072251	1.00[CEU][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.84[ASN][1000 genomes]
rs7076424	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085174	0.89[ASN][1000 genomes]
rs7091809	0.80[AMR][1000 genomes]
rs7099796	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72637514	0.91[ASN][1000 genomes]
rs72637515	0.91[ASN][1000 genomes]
rs72637516	0.90[ASN][1000 genomes]
rs7894128	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7896766	0.86[JPT][hapmap]
rs7905645	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7919557	0.83[ASN][1000 genomes]
rs7919588	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8181290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9663433	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9664029	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
3	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr10:98015400-98026200	Genic enhancers	Primary B cells from cord blood	blood
5	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:98015800-98023200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:98015800-98026200	Weak transcription	Esophagus	oesophagus
8	chr10:98016000-98023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:98017000-98024400	Enhancers	Stomach Mucosa	stomach
10	chr10:98018000-98021600	Weak transcription	Right Atrium	heart
11	chr10:98019000-98022800	Weak transcription	Pancreas	Pancrea
12	chr10:98019000-98023800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:98019000-98024200	Enhancers	Fetal Intestine Large	intestine
14	chr10:98019200-98022600	Enhancers	Fetal Intestine Small	intestine
15	chr10:98019400-98021800	Weak transcription	Lung	lung
16	chr10:98019600-98025600	Enhancers	Liver	Liver
17	chr10:98019800-98021600	Weak transcription	HMEC	breast
18	chr10:98019800-98021800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:98019800-98022000	Weak transcription	Colonic Mucosa	Colon
20	chr10:98019800-98022800	Weak transcription	Gastric	stomach
21	chr10:98019800-98023000	Weak transcription	Spleen	Spleen
22	chr10:98019800-98023800	Weak transcription	Placenta	Placenta
23	chr10:98019800-98028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:98020000-98022000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:98020000-98029400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:98020200-98021800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:98020200-98022600	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:98020200-98023400	Weak transcription	Fetal Lung	lung
29	chr10:98020200-98023800	Weak transcription	Adipose Nuclei	Adipose
30	chr10:98020400-98021600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:98020800-98022000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:98021000-98029800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood

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