Variant report

Variant	rs10882767
Chromosome Location	chr10:98036343-98036344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98030298..98031944-chr10:98035782..98037384,2	MCF-7	breast:
2	chr10:98036148..98037827-chr10:98042668..98045644,2	MCF-7	breast:
3	chr10:98031417..98034385-chr10:98034757..98037553,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882768	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188699	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188710	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs11188731	1.00[CEU][hapmap]
rs12242936	1.00[CEU][hapmap]
rs12250473	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12257639	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12411820	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12414495	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12414529	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12570008	1.00[CEU][hapmap]
rs12572610	1.00[CEU][hapmap]
rs12573362	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs17111536	0.85[ASN][1000 genomes]
rs17111540	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17111736	1.00[CEU][hapmap]
rs1902704	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2069238	0.97[ASN][1000 genomes]
rs2146385	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2146391	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2273892	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs2861306	0.86[JPT][hapmap]
rs3789933	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3789939	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs3789940	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs41291614	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4917730	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4919000	0.86[JPT][hapmap]
rs57519557	0.91[AMR][1000 genomes]
rs6584061	0.86[JPT][hapmap]
rs6584064	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs67425977	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7069190	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7072251	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7078316	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7083595	0.95[ASN][1000 genomes]
rs7091809	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72637514	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72637515	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72637516	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72640001	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs734225	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs734226	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs7896766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7905402	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7919557	0.89[AMR][1000 genomes]
rs7919588	0.91[ASN][1000 genomes]
rs7919799	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7922788	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs941998	0.99[ASN][1000 genomes]
rs941999	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:98033400-98037800	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:98033600-98037400	Enhancers	Primary B cells from cord blood	blood
4	chr10:98034200-98042200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:98034400-98036400	Enhancers	GM12878-XiMat	blood
6	chr10:98034600-98036400	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr10:98035200-98036400	Enhancers	Liver	Liver
8	chr10:98035200-98036400	Enhancers	Left Ventricle	heart
9	chr10:98035200-98036400	Enhancers	Right Ventricle	heart
10	chr10:98035200-98036600	Enhancers	Pancreas	Pancrea
11	chr10:98035200-98037400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:98035200-98037400	Enhancers	HMEC	breast
13	chr10:98035200-98037600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:98035400-98036600	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:98035400-98036600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr10:98035400-98037000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:98035400-98037200	Enhancers	NHEK	skin
18	chr10:98035600-98036400	Enhancers	Fetal Intestine Large	intestine
19	chr10:98035600-98036400	Enhancers	Gastric	stomach
20	chr10:98035600-98036400	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:98035600-98036400	Enhancers	Dnd41	blood
22	chr10:98035600-98036600	Enhancers	Fetal Intestine Small	intestine
23	chr10:98035600-98037000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:98035600-98037400	Enhancers	Esophagus	oesophagus
25	chr10:98035800-98036400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:98035800-98036400	Enhancers	Right Atrium	heart
27	chr10:98035800-98036600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:98036200-98036400	Enhancers	Colonic Mucosa	Colon
29	chr10:98036200-98038800	Weak transcription	Stomach Mucosa	stomach

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