Variant report

Variant	rs17111736
Chromosome Location	chr10:98111569-98111570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.84[GIH][hapmap]
rs10882767	1.00[CEU][hapmap]
rs11188710	1.00[CEU][hapmap]
rs11188724	0.81[JPT][hapmap]
rs11188725	0.81[JPT][hapmap]
rs11188731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12570008	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12571241	0.81[JPT][hapmap]
rs12572329	0.81[JPT][hapmap]
rs12572610	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs17111540	1.00[CEU][hapmap]
rs1923702	0.86[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2146385	1.00[CEU][hapmap];0.88[GIH][hapmap];1.00[MKK][hapmap]
rs2146393	0.81[JPT][hapmap]
rs2273892	1.00[CEU][hapmap]
rs28384391	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2901989	0.81[JPT][hapmap]
rs3789939	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs3814224	0.81[JPT][hapmap]
rs7072251	0.88[GIH][hapmap]
rs734225	1.00[CEU][hapmap]
rs734226	1.00[CEU][hapmap];0.87[GIH][hapmap]
rs7896766	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98105000-98113200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98106200-98112600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:98106200-98113000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
5	chr10:98106600-98112400	Weak transcription	Brain Substantia Nigra	brain
6	chr10:98106600-98112400	Weak transcription	Dnd41	blood
7	chr10:98109600-98112000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:98109600-98113000	Weak transcription	Thymus	Thymus
9	chr10:98110800-98114200	Enhancers	Brain Angular Gyrus	brain
10	chr10:98111200-98114200	Enhancers	Fetal Intestine Small	intestine
11	chr10:98111400-98112000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:98111400-98112000	Enhancers	Duodenum Mucosa	Duodenum
13	chr10:98111400-98112400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:98111400-98112800	Enhancers	Liver	Liver
15	chr10:98111400-98113200	Enhancers	Brain Hippocampus Middle	brain

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