Variant report

Variant	rs7072251
Chromosome Location	chr10:98032402-98032403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98031951-98032900	GM12878	blood:	n/a	n/a
2	RELA	chr10:98030514-98033511	GM18505	blood:	n/a	n/a
3	PML	chr10:98031913-98033615	GM12878	blood:	n/a	n/a
4	IKZF1	chr10:98030874-98033590	GM12878	blood:	n/a	n/a
5	POLR2A	chr10:98030661-98033581	GM12878	blood:	n/a	n/a
6	CHD1	chr10:98029337-98033574	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:98032275-98033485	GM12891	blood:	n/a	n/a
8	POLR2A	chr10:98030462-98033576	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:98030748-98033613	GM12878	blood:	n/a	n/a
10	POLR2A	chr10:98030482-98033560	GM18505	blood:	n/a	n/a
11	POLR2A	chr10:98030975-98033546	GM12892	blood:	n/a	n/a
12	RELA	chr10:98030543-98033525	GM10847	blood:	n/a	n/a
13	POLR2A	chr10:98031793-98032702	GM12892	blood:	n/a	n/a
14	RELA	chr10:98032343-98033578	GM15510	blood:	n/a	n/a
15	POLR2A	chr10:98030836-98033840	GM18951	blood:	n/a	n/a
16	MAZ	chr10:98030740-98033512	GM12878	blood:	n/a	chr10:98031883-98031892 chr10:98031368-98031381
17	POLR2A	chr10:98031657-98033499	GM12892	blood:	n/a	n/a
18	POLR2A	chr10:98030880-98033488	GM18526	blood:	n/a	n/a
19	STAT5A	chr10:98030759-98032588	GM12878	blood:	n/a	chr10:98032188-98032200
20	POLR2A	chr10:98030962-98033520	GM19193	blood:	n/a	n/a
21	POLR2A	chr10:98021631-98034356	GM12891	blood:	n/a	n/a
22	CHD2	chr10:98032170-98033493	GM12878	blood:	n/a	n/a
23	POLR2A	chr10:98030958-98033548	Raji	blood:	n/a	n/a
24	MTA3	chr10:98030997-98032690	GM12878	blood:	n/a	n/a
25	WRNIP1	chr10:98030859-98032510	GM12878	blood:	n/a	n/a
26	POLR2A	chr10:98030452-98033504	GM12878	blood:	n/a	n/a
27	ZEB1	chr10:98031897-98032413	GM12878	blood:	n/a	chr10:98032181-98032190
28	MTA3	chr10:98030531-98033611	GM12878	blood:	n/a	n/a
29	TBL1XR1	chr10:98030858-98032585	GM12878	blood:	n/a	n/a
30	POLR2A	chr10:98029161-98033583	GM19099	blood:	n/a	n/a
31	POLR2A	chr10:98031905-98033466	GM15510	blood:	n/a	n/a
32	POLR2A	chr10:98031789-98033504	GM12892	blood:	n/a	n/a
33	RELA	chr10:98031957-98033612	GM12891	blood:	n/a	n/a
34	POLR2A	chr10:98031711-98032555	GM12891	blood:	n/a	n/a
35	POLR2A	chr10:98031913-98033334	GM10847	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97802645..97804655-chr10:98031643..98033202,2	MCF-7	breast:
2	chr10:98031716..98034218-chr10:98044340..98046189,2	MCF-7	breast:
3	chr10:97848840..97850347-chr10:98030578..98032838,2	MCF-7	breast:
4	chr10:98031417..98034385-chr10:98034757..98037553,2	MCF-7	breast:

Variant related genes	Relation type
BLNK	TF binding region
ENSG00000226688	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509707	0.87[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs1075834	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882765	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882767	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10882768	0.91[ASN][1000 genomes]
rs11188699	0.91[ASN][1000 genomes]
rs11188710	0.95[JPT][hapmap]
rs12242936	0.88[GIH][hapmap];0.85[MKK][hapmap]
rs12250473	0.84[ASN][1000 genomes]
rs12257639	0.86[ASN][1000 genomes]
rs12569756	1.00[JPT][hapmap]
rs12570008	0.88[GIH][hapmap]
rs12573362	0.90[JPT][hapmap]
rs17111540	0.85[JPT][hapmap]
rs17111736	0.88[GIH][hapmap]
rs1902704	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2069238	0.89[ASN][1000 genomes]
rs2146385	0.84[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs2146391	0.91[ASN][1000 genomes]
rs2273892	0.95[JPT][hapmap]
rs2861306	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2861308	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3789934	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3789939	0.84[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap]
rs3789940	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs41291614	0.87[ASN][1000 genomes]
rs4917730	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919000	1.00[CEU][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.84[ASN][1000 genomes]
rs4919001	0.83[ASN][1000 genomes]
rs6584061	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6584064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069190	0.90[ASN][1000 genomes]
rs7076424	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7078316	0.87[ASN][1000 genomes]
rs7083595	0.87[ASN][1000 genomes]
rs7091809	0.90[ASN][1000 genomes]
rs7099796	0.81[ASN][1000 genomes]
rs72640001	0.91[ASN][1000 genomes]
rs734225	0.94[JPT][hapmap]
rs734226	0.84[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap]
rs7896766	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7905402	0.91[ASN][1000 genomes]
rs7919588	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919799	0.90[ASN][1000 genomes]
rs7922788	0.91[ASN][1000 genomes]
rs8181290	0.85[ASN][1000 genomes]
rs941998	0.91[ASN][1000 genomes]
rs941999	0.91[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98026200-98033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:98031000-98033200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
3	chr10:98031000-98034600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:98031200-98033200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:98031200-98033200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:98031200-98033200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:98031200-98033200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:98031200-98033400	Enhancers	Adipose Nuclei	Adipose
9	chr10:98031200-98033600	Enhancers	Placenta	Placenta
10	chr10:98031400-98032800	Active TSS	Rectal Smooth Muscle	rectum
11	chr10:98031400-98032800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:98031400-98033200	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr10:98031400-98033200	Enhancers	Liver	Liver
14	chr10:98031400-98033200	Enhancers	Fetal Lung	lung
15	chr10:98031400-98033200	Enhancers	Stomach Mucosa	stomach
16	chr10:98031400-98033400	Flanking Active TSS	Primary B cells from peripheral blood	blood
17	chr10:98031400-98033600	Enhancers	Fetal Intestine Small	intestine
18	chr10:98031400-98034000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:98031400-98035600	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:98031400-98035600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:98031600-98032600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:98031600-98032800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:98031600-98033000	Enhancers	Pancreas	Pancrea
24	chr10:98031600-98033200	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr10:98031600-98033200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr10:98031600-98033200	Enhancers	HMEC	breast
27	chr10:98031600-98033200	Enhancers	NHEK	skin
28	chr10:98031600-98034200	Enhancers	Fetal Intestine Large	intestine
29	chr10:98031600-98035600	Weak transcription	Dnd41	blood
30	chr10:98031800-98032600	Enhancers	Small Intestine	intestine
31	chr10:98031800-98033000	Enhancers	Colonic Mucosa	Colon
32	chr10:98031800-98033200	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr10:98032000-98032600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:98032000-98032800	Enhancers	Fetal Kidney	kidney
35	chr10:98032000-98032800	Enhancers	Gastric	stomach
36	chr10:98032000-98033000	Enhancers	Fetal Thymus	thymus
37	chr10:98032000-98033000	Enhancers	Lung	lung
38	chr10:98032000-98033000	Enhancers	Spleen	Spleen
39	chr10:98032000-98033200	Flanking Active TSS	GM12878-XiMat	blood
40	chr10:98032200-98032600	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:98032200-98033200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr10:98032400-98032800	Flanking Active TSS	Esophagus	oesophagus
43	chr10:98032400-98032800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr10:98032400-98033400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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