Variant report

Variant	rs12573362
Chromosome Location	chr10:98081108-98081109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10509707	0.87[CHB][hapmap];0.90[JPT][hapmap]
rs10786276	0.97[ASN][1000 genomes]
rs10882767	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs11188710	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs12569756	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2146385	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2273892	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3789939	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs3789940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs4917730	0.86[JPT][hapmap]
rs6584064	0.91[JPT][hapmap]
rs67425977	0.88[ASN][1000 genomes]
rs7072251	0.90[JPT][hapmap]
rs7074775	0.97[ASN][1000 genomes]
rs734225	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs734226	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7896766	0.88[CHB][hapmap];0.91[JPT][hapmap]
rs941996	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98072000-98081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:98077800-98089600	Strong transcription	Dnd41	blood
4	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
5	chr10:98080000-98081200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:98080200-98085000	Weak transcription	GM12878-XiMat	blood
7	chr10:98080400-98081600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:98080400-98083600	Strong transcription	Fetal Thymus	thymus
9	chr10:98080400-98089200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:98081000-98082000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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