Variant report

Variant	rs4917730
Chromosome Location	chr10:98034720-98034721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97888967..97891349-chr10:98033434..98034953,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509707	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1075834	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882765	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882767	0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10882768	0.91[ASN][1000 genomes]
rs11188699	0.91[ASN][1000 genomes]
rs11188710	0.91[JPT][hapmap]
rs12250473	0.84[ASN][1000 genomes]
rs12257639	0.85[ASN][1000 genomes]
rs12569756	0.95[JPT][hapmap]
rs12573362	0.86[JPT][hapmap]
rs17111540	0.82[JPT][hapmap]
rs1902704	0.86[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2069238	0.89[ASN][1000 genomes]
rs2146385	0.95[JPT][hapmap]
rs2146391	0.91[ASN][1000 genomes]
rs2273892	0.91[JPT][hapmap]
rs2861306	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2861308	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3789934	0.85[ASN][1000 genomes]
rs3789939	0.90[JPT][hapmap]
rs3789940	0.90[JPT][hapmap]
rs41291614	0.87[ASN][1000 genomes]
rs4919000	0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4919001	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6584061	0.87[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6584064	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069190	0.90[ASN][1000 genomes]
rs7072251	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076424	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7078316	0.87[ASN][1000 genomes]
rs7083595	0.87[ASN][1000 genomes]
rs7091809	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7099796	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72640001	0.91[ASN][1000 genomes]
rs734225	0.89[JPT][hapmap]
rs734226	0.86[JPT][hapmap]
rs7896766	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7905402	0.90[ASN][1000 genomes]
rs7919588	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7919799	0.91[ASN][1000 genomes]
rs7922788	0.90[ASN][1000 genomes]
rs8181290	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs941998	0.90[ASN][1000 genomes]
rs941999	0.91[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98031400-98035600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:98031400-98035600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:98031600-98035600	Weak transcription	Dnd41	blood
4	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:98032600-98035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:98032600-98035400	Weak transcription	Small Intestine	intestine
7	chr10:98032800-98035600	Weak transcription	Esophagus	oesophagus
8	chr10:98032800-98035600	Weak transcription	Fetal Kidney	kidney
9	chr10:98032800-98035600	Weak transcription	Gastric	stomach
10	chr10:98032800-98035600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:98033000-98035200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:98033000-98035200	Weak transcription	Pancreas	Pancrea
13	chr10:98033000-98035800	Weak transcription	Spleen	Spleen
14	chr10:98033000-98036200	Weak transcription	Colonic Mucosa	Colon
15	chr10:98033200-98035200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:98033200-98035200	Weak transcription	Liver	Liver
17	chr10:98033200-98035200	Weak transcription	HMEC	breast
18	chr10:98033200-98035400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:98033200-98035400	Weak transcription	NHEK	skin
20	chr10:98033200-98035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:98033200-98035600	Weak transcription	Fetal Lung	lung
22	chr10:98033200-98035600	Weak transcription	Stomach Mucosa	stomach
23	chr10:98033400-98035400	Weak transcription	Adipose Nuclei	Adipose
24	chr10:98033400-98035400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:98033400-98035400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:98033400-98035800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:98033400-98037800	Enhancers	Primary B cells from peripheral blood	blood
28	chr10:98033600-98035600	Weak transcription	Fetal Intestine Small	intestine
29	chr10:98033600-98037400	Enhancers	Primary B cells from cord blood	blood
30	chr10:98034200-98035600	Weak transcription	Fetal Intestine Large	intestine
31	chr10:98034200-98042200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:98034400-98036400	Enhancers	GM12878-XiMat	blood
33	chr10:98034600-98036400	Enhancers	Rectal Mucosa Donor 29	rectum

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