Variant report

Variant	rs1902704
Chromosome Location	chr10:98026732-98026733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98025106..98027142-chr10:98028676..98031247,2	K562	blood:
2	chr10:98019198..98021083-chr10:98025208..98027242,2	MCF-7	breast:
3	chr10:98025433..98027161-chr10:98027788..98030439,2	K562	blood:
4	chr10:98018546..98020304-chr10:98024707..98027759,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509707	0.87[GIH][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1075834	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882761	0.83[ASN][1000 genomes]
rs10882765	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882767	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs10882768	0.81[ASN][1000 genomes]
rs11188699	0.81[ASN][1000 genomes]
rs11188710	0.82[JPT][hapmap]
rs12411820	0.87[ASN][1000 genomes]
rs12414495	0.86[ASN][1000 genomes]
rs12414529	0.86[ASN][1000 genomes]
rs12569756	0.86[JPT][hapmap]
rs17111536	0.88[ASN][1000 genomes]
rs17111540	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2146385	0.84[GIH][hapmap];0.86[JPT][hapmap]
rs2146391	0.81[ASN][1000 genomes]
rs2273892	0.82[JPT][hapmap]
rs2861306	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2861308	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3762094	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3789930	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3789933	0.84[ASN][1000 genomes]
rs3789934	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789939	0.82[JPT][hapmap]
rs3789940	0.82[JPT][hapmap]
rs4917730	0.86[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4919000	1.00[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4919001	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6584061	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584064	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7069190	0.80[ASN][1000 genomes]
rs7072251	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7076424	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7085174	0.86[ASN][1000 genomes]
rs7091809	0.81[ASN][1000 genomes]
rs7099796	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72637514	0.88[ASN][1000 genomes]
rs72637515	0.88[ASN][1000 genomes]
rs72637516	0.89[ASN][1000 genomes]
rs72640001	0.80[ASN][1000 genomes]
rs7894128	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7896766	0.86[JPT][hapmap]
rs7905402	0.80[ASN][1000 genomes]
rs7905645	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7919588	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7919799	0.81[ASN][1000 genomes]
rs7922788	0.80[ASN][1000 genomes]
rs8181290	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs941998	0.80[ASN][1000 genomes]
rs941999	0.81[ASN][1000 genomes]
rs9663433	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9664029	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:98019800-98028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:98020000-98029400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:98021000-98029800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
7	chr10:98022600-98026800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:98023600-98031800	Weak transcription	Small Intestine	intestine
9	chr10:98023800-98032000	Weak transcription	Spleen	Spleen
10	chr10:98024600-98029200	Weak transcription	Placenta	Placenta
11	chr10:98025400-98029400	Enhancers	Stomach Mucosa	stomach
12	chr10:98025600-98026800	Genic enhancers	Fetal Intestine Large	intestine
13	chr10:98025600-98027600	Enhancers	Pancreas	Pancrea
14	chr10:98025800-98028600	Weak transcription	Fetal Kidney	kidney
15	chr10:98026000-98026800	Genic enhancers	Fetal Intestine Small	intestine
16	chr10:98026000-98027400	Enhancers	Gastric	stomach
17	chr10:98026000-98027400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr10:98026000-98027600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:98026000-98027800	Enhancers	HMEC	breast
20	chr10:98026200-98026800	Genic enhancers	Esophagus	oesophagus
21	chr10:98026200-98027200	Enhancers	Colonic Mucosa	Colon
22	chr10:98026200-98027600	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
23	chr10:98026200-98027600	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr10:98026200-98029000	Flanking Active TSS	Liver	Liver
25	chr10:98026200-98033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:98026400-98028200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr10:98026400-98028200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:98026600-98027400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:98026600-98027400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:98026600-98027400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr10:98026600-98027600	Enhancers	NHEK	skin
32	chr10:98026600-98027800	Enhancers	Placenta Amnion	Placenta Amnion

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