Variant report

Variant	rs3762094
Chromosome Location	chr10:98010954-98010955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98010068..98012555-chr10:98015441..98017088,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10509707	0.81[GIH][hapmap];0.85[MEX][hapmap]
rs1075834	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882761	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10882765	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188679	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12411820	0.84[ASN][1000 genomes]
rs12414495	0.84[ASN][1000 genomes]
rs12414529	0.85[ASN][1000 genomes]
rs17111536	0.84[ASN][1000 genomes]
rs17111540	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1902704	0.95[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2146385	0.85[MEX][hapmap]
rs2168732	0.83[ASN][1000 genomes]
rs2861306	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2861308	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3762093	0.90[ASN][1000 genomes]
rs3789929	0.85[ASN][1000 genomes]
rs3789930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789933	0.87[ASN][1000 genomes]
rs3789934	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4919000	1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4919001	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57519557	0.89[ASN][1000 genomes]
rs6584061	0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7072251	0.84[GIH][hapmap];1.00[MEX][hapmap]
rs7076424	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7085174	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7099796	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72637514	0.84[ASN][1000 genomes]
rs72637515	0.84[ASN][1000 genomes]
rs72637516	0.83[ASN][1000 genomes]
rs734226	0.85[MEX][hapmap]
rs7894128	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919557	0.90[ASN][1000 genomes]
rs8181290	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9663433	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9664029	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98002000-98015400	Weak transcription	Esophagus	oesophagus
3	chr10:98005000-98019000	Weak transcription	Colonic Mucosa	Colon
4	chr10:98006800-98011200	Enhancers	Fetal Intestine Large	intestine
5	chr10:98007200-98018800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:98007600-98011400	Genic enhancers	Primary B cells from cord blood	blood
7	chr10:98007800-98011200	Enhancers	Fetal Intestine Small	intestine
8	chr10:98008400-98011200	Enhancers	Duodenum Mucosa	Duodenum
9	chr10:98009000-98011400	Enhancers	Liver	Liver
10	chr10:98009000-98012400	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:98009200-98012600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:98009400-98012600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:98009400-98014800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:98009400-98014800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:98009400-98016800	Weak transcription	Pancreas	Pancrea
16	chr10:98009600-98015000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:98009600-98015200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:98009800-98011200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr10:98009800-98012000	Weak transcription	GM12878-XiMat	blood
20	chr10:98010000-98017200	Weak transcription	Small Intestine	intestine
21	chr10:98010000-98018000	Weak transcription	Gastric	stomach
22	chr10:98010400-98014800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:98010400-98017000	Weak transcription	Stomach Mucosa	stomach
24	chr10:98010600-98011000	Weak transcription	Spleen	Spleen
25	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
26	chr10:98010800-98011200	Weak transcription	Rectal Mucosa Donor 29	rectum

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