Variant report

Variant	rs17111536
Chromosome Location	chr10:98019690-98019691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98011501..98013268-chr10:98017760..98019968,2	MCF-7	breast:
2	chr10:98019198..98021083-chr10:98025208..98027242,2	MCF-7	breast:
3	chr10:98018546..98020304-chr10:98024707..98027759,3	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1075834	0.90[ASN][1000 genomes]
rs10882765	0.89[ASN][1000 genomes]
rs10882767	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10882768	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188699	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188710	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs11188731	1.00[CEU][hapmap]
rs12242936	1.00[CEU][hapmap]
rs12250473	0.85[ASN][1000 genomes]
rs12257639	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12411820	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12414495	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12414529	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs12570008	1.00[CEU][hapmap]
rs12572610	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17111540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17111736	1.00[CEU][hapmap]
rs1902704	0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[ASN][1000 genomes]
rs2069238	0.85[ASN][1000 genomes]
rs2146385	1.00[CEU][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap]
rs2146391	0.87[ASN][1000 genomes]
rs2168732	0.82[ASN][1000 genomes]
rs2273892	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2861306	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2861308	0.90[ASN][1000 genomes]
rs3762093	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3762094	0.84[ASN][1000 genomes]
rs3789929	0.87[ASN][1000 genomes]
rs3789930	0.84[ASN][1000 genomes]
rs3789933	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789934	0.91[ASN][1000 genomes]
rs3789939	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap]
rs3789940	0.82[JPT][hapmap]
rs41291614	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4917730	0.82[JPT][hapmap]
rs4919000	0.87[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs4919001	0.90[ASN][1000 genomes]
rs57519557	0.89[ASN][1000 genomes]
rs6584061	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6584064	0.86[JPT][hapmap]
rs7069190	0.86[ASN][1000 genomes]
rs7072251	0.81[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap]
rs7076424	0.91[ASN][1000 genomes]
rs7078316	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7083595	0.83[ASN][1000 genomes]
rs7085174	0.81[ASN][1000 genomes]
rs7091809	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7099796	0.87[ASN][1000 genomes]
rs72637514	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72637515	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72637516	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72640001	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs734225	1.00[CEU][hapmap]
rs734226	1.00[CEU][hapmap];0.92[MEX][hapmap]
rs74153608	0.88[AFR][1000 genomes]
rs74153609	0.88[AFR][1000 genomes]
rs7894128	0.82[ASN][1000 genomes]
rs7896766	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7905402	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7905645	0.84[ASN][1000 genomes]
rs7919557	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7919799	0.86[ASN][1000 genomes]
rs7922788	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8181290	0.91[ASN][1000 genomes]
rs941998	0.86[ASN][1000 genomes]
rs941999	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9663433	0.84[ASN][1000 genomes]
rs9664029	0.84[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
3	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr10:98015400-98026200	Genic enhancers	Primary B cells from cord blood	blood
5	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:98015800-98023200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:98015800-98026200	Weak transcription	Esophagus	oesophagus
8	chr10:98016000-98023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:98016400-98019800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:98016800-98019800	Enhancers	Spleen	Spleen
11	chr10:98017000-98024400	Enhancers	Stomach Mucosa	stomach
12	chr10:98018000-98021600	Weak transcription	Right Atrium	heart
13	chr10:98018600-98019800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:98018800-98020000	Enhancers	Duodenum Mucosa	Duodenum
15	chr10:98018800-98020400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:98019000-98020200	Enhancers	Fetal Muscle Leg	muscle
17	chr10:98019000-98022800	Weak transcription	Pancreas	Pancrea
18	chr10:98019000-98023800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr10:98019000-98024200	Enhancers	Fetal Intestine Large	intestine
20	chr10:98019200-98019800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:98019200-98019800	Enhancers	Placenta	Placenta
22	chr10:98019200-98019800	Enhancers	HMEC	breast
23	chr10:98019200-98022600	Enhancers	Fetal Intestine Small	intestine
24	chr10:98019400-98020400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr10:98019400-98020800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:98019400-98021800	Weak transcription	Lung	lung
27	chr10:98019600-98019800	Enhancers	Colonic Mucosa	Colon
28	chr10:98019600-98019800	Enhancers	Gastric	stomach
29	chr10:98019600-98019800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr10:98019600-98020000	Enhancers	Left Ventricle	heart
31	chr10:98019600-98020000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:98019600-98020000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:98019600-98020200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:98019600-98020200	Enhancers	Adipose Nuclei	Adipose
35	chr10:98019600-98020200	Enhancers	Brain Substantia Nigra	brain
36	chr10:98019600-98020200	Enhancers	Fetal Lung	lung
37	chr10:98019600-98020200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
38	chr10:98019600-98021000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr10:98019600-98025600	Enhancers	Liver	Liver

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