Variant report

Variant	rs2069238
Chromosome Location	chr10:98055090-98055091
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98054173..98056503-chr10:98059907..98061674,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10882768	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188699	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188710	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11188731	1.00[CEU][hapmap]
rs12242936	1.00[CEU][hapmap]
rs12250473	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12257639	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12258764	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs12411820	0.85[ASN][1000 genomes]
rs12414495	0.84[ASN][1000 genomes]
rs12414529	0.84[ASN][1000 genomes]
rs12569756	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12570008	1.00[CEU][hapmap]
rs12572610	1.00[CEU][hapmap]
rs12573362	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs17111536	0.85[ASN][1000 genomes]
rs17111540	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17111736	1.00[CEU][hapmap]
rs1902704	0.84[JPT][hapmap]
rs2146385	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2146391	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2273892	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2861306	0.84[JPT][hapmap]
rs3789933	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3789939	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs3789940	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs41291614	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917730	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4919000	0.84[JPT][hapmap]
rs6584061	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs6584064	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs67425977	0.83[ASN][1000 genomes]
rs7069190	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072251	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7078316	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7083595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7091809	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72637514	0.84[ASN][1000 genomes]
rs72637515	0.84[ASN][1000 genomes]
rs72637516	0.86[ASN][1000 genomes]
rs72640001	0.98[ASN][1000 genomes]
rs734225	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs734226	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs7896766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7905402	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919588	0.90[ASN][1000 genomes]
rs7919799	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7922788	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs941998	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs941999	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98048600-98058800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:98050600-98059200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98052400-98055600	Enhancers	Fetal Thymus	thymus
4	chr10:98052800-98058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:98053200-98055200	Enhancers	Thymus	Thymus
6	chr10:98053200-98059200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:98053600-98055200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:98053800-98055200	Weak transcription	GM12878-XiMat	blood
9	chr10:98054400-98056400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr10:98054600-98056200	Enhancers	Brain Germinal Matrix	brain
11	chr10:98054800-98055800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr10:98054800-98056200	Enhancers	Primary B cells from cord blood	blood
13	chr10:98054800-98056200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr10:98054800-98056400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:98055000-98055400	Enhancers	Dnd41	blood
16	chr10:98055000-98056000	Enhancers	Primary T helper cells fromperipheralblood	blood

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