Variant report

Variant	rs734225
Chromosome Location	chr10:98077114-98077115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509707	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10786276	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882767	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs11188710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188731	1.00[CEU][hapmap]
rs12242936	1.00[CEU][hapmap]
rs12258764	0.85[JPT][hapmap]
rs12569756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12570008	1.00[CEU][hapmap]
rs12572610	1.00[CEU][hapmap]
rs12573362	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs17111540	1.00[CEU][hapmap]
rs17111736	1.00[CEU][hapmap]
rs2146385	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2146390	0.85[JPT][hapmap]
rs2273892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3789938	0.85[JPT][hapmap]
rs3789939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789940	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs41291614	0.81[EUR][1000 genomes]
rs4917730	0.89[JPT][hapmap]
rs6584061	0.80[JPT][hapmap]
rs6584064	0.95[JPT][hapmap]
rs67425977	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7072251	0.94[JPT][hapmap]
rs7074775	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs734226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896766	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs941996	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98070400-98079800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:98071000-98079600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:98071000-98080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:98071400-98079600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:98072000-98081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:98072400-98079800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:98076000-98079600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:98076200-98079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:98076400-98079600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:98076600-98077800	Weak transcription	Thymus	Thymus
12	chr10:98076600-98077800	Weak transcription	Dnd41	blood
13	chr10:98076600-98078000	Weak transcription	Fetal Thymus	thymus

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