Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98062862..98065652-chr10:98072222..98073783,2	MCF-7	breast:
2	chr10:98067037..98069492-chr10:98071586..98073914,2	K562	blood:

Variant related genes	Relation type
ENSG00000107447	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10509708	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs10882771	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188697	0.84[CEU][hapmap]
rs11188704	0.84[CEU][hapmap];0.88[TSI][hapmap]
rs11188724	0.84[GIH][hapmap];0.83[MEX][hapmap]
rs11188725	0.84[GIH][hapmap];0.83[MEX][hapmap]
rs11598258	0.84[CEU][hapmap]
rs12258764	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12269557	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs12571241	0.84[GIH][hapmap];0.83[MEX][hapmap]
rs12572329	0.84[GIH][hapmap];0.83[MEX][hapmap]
rs12761715	0.84[CEU][hapmap]
rs12766367	0.84[CEU][hapmap]
rs12772674	0.84[CEU][hapmap]
rs12774154	0.84[CEU][hapmap]
rs12779164	0.84[CEU][hapmap]
rs12779564	0.84[CEU][hapmap]
rs17111609	0.84[CEU][hapmap]
rs17111612	0.84[CEU][hapmap]
rs17111614	0.83[CEU][hapmap]
rs17111622	0.84[CEU][hapmap]
rs17111628	0.84[CEU][hapmap]
rs2146387	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2146390	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3789937	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs7073871	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs7089451	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs734225	0.85[JPT][hapmap]
rs941997	0.82[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3789938	CHUK	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
3	chr10:98070400-98079800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:98071000-98079600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:98071000-98080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:98071200-98075000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:98071400-98079600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:98071800-98073800	Flanking Active TSS	Thymus	Thymus
9	chr10:98072000-98073000	Flanking Active TSS	Dnd41	blood
10	chr10:98072000-98081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:98072200-98074200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:98072400-98073400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:98072400-98074800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:98072400-98075800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr10:98072400-98079800	Weak transcription	H1 Cell Line	embryonic stem cell

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