Variant report

Variant	rs941997
Chromosome Location	chr10:98046836-98046837
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98042724..98044710-chr10:98045849..98048382,2	K562	blood:
2	chr10:98046170..98047854-chr10:98073375..98075159,2	MCF-7	breast:
3	chr10:98029277..98032008-chr10:98042725..98046878,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095585	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12258764	0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1998409	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2146387	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2146390	0.86[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs3789938	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs6584064	0.92[YRI][hapmap];0.92[AFR][1000 genomes]
rs7089451	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7919588	0.90[AFR][1000 genomes]
rs941998	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:98041600-98047000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:98041600-98047000	Weak transcription	NHEK	skin
4	chr10:98043400-98047400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:98043600-98047000	Weak transcription	HMEC	breast
6	chr10:98044800-98047200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:98044800-98047400	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:98044800-98047400	Enhancers	Fetal Intestine Large	intestine
9	chr10:98045000-98047000	Enhancers	Duodenum Mucosa	Duodenum
10	chr10:98045000-98047400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:98045200-98047000	Enhancers	Fetal Kidney	kidney
12	chr10:98045200-98047200	Enhancers	Liver	Liver
13	chr10:98045200-98047400	Enhancers	Fetal Intestine Small	intestine
14	chr10:98045400-98047000	Weak transcription	Placenta	Placenta
15	chr10:98045400-98048000	Weak transcription	Gastric	stomach
16	chr10:98045400-98048200	Enhancers	Colonic Mucosa	Colon
17	chr10:98045600-98047000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:98045600-98047000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:98045600-98047000	Weak transcription	Small Intestine	intestine
20	chr10:98045600-98047200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:98045600-98047600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:98045600-98049800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:98045600-98052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:98045600-98053000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:98045800-98047000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr10:98046200-98047400	Enhancers	Pancreas	Pancrea
27	chr10:98046200-98048400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:98046400-98047000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr10:98046400-98047400	Flanking Active TSS	GM12878-XiMat	blood
30	chr10:98046400-98047600	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr10:98046400-98047600	Enhancers	Stomach Mucosa	stomach
32	chr10:98046400-98047800	Enhancers	Colon Smooth Muscle	Colon
33	chr10:98046400-98048600	Enhancers	Dnd41	blood
34	chr10:98046600-98047200	Weak transcription	Spleen	Spleen
35	chr10:98046600-98047400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:98046600-98047600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:98046600-98048200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:98046600-98050800	Enhancers	Fetal Thymus	thymus
39	chr10:98046800-98047400	Enhancers	Primary hematopoietic stem cells	blood
40	chr10:98046800-98047400	Enhancers	Thymus	Thymus
41	chr10:98046800-98049400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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