Variant report

Variant	rs7089451
Chromosome Location	chr10:98057438-98057439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12258764	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998409	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2146387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146390	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3789938	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs941997	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98048600-98058800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:98050600-98059200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98052800-98058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98053200-98059200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:98055200-98061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:98055800-98058600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:98055800-98058600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:98055800-98058800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:98055800-98059200	Weak transcription	GM12878-XiMat	blood
10	chr10:98056200-98058800	Weak transcription	Primary B cells from cord blood	blood
11	chr10:98056600-98057800	Enhancers	Brain Germinal Matrix	brain
12	chr10:98056800-98059000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr10:98056800-98062800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:98057000-98057600	Genic enhancers	Fetal Thymus	thymus
15	chr10:98057000-98059600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:98057200-98061800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:98057400-98058000	Enhancers	Fetal Brain Male	brain
18	chr10:98057400-98058600	Genic enhancers	Dnd41	blood
19	chr10:98057400-98060000	Flanking Active TSS	Thymus	Thymus
20	chr10:98057400-98061200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:98057400-98062000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links