Variant report

Variant	rs7919588
Chromosome Location	chr10:98040651-98040652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98028582..98031013-chr10:98039687..98041384,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509707	0.91[ASN][1000 genomes]
rs1075834	0.85[ASN][1000 genomes]
rs10882765	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882767	0.91[ASN][1000 genomes]
rs10882768	0.91[ASN][1000 genomes]
rs11188699	0.91[ASN][1000 genomes]
rs12250473	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12257639	0.85[ASN][1000 genomes]
rs1902704	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2069238	0.90[ASN][1000 genomes]
rs2146391	0.91[ASN][1000 genomes]
rs2861306	0.85[ASN][1000 genomes]
rs2861308	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3789934	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41291614	0.88[ASN][1000 genomes]
rs4917730	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919000	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4919001	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6584061	0.87[ASN][1000 genomes]
rs6584064	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069190	0.91[ASN][1000 genomes]
rs7072251	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7076424	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7078316	0.88[ASN][1000 genomes]
rs7083595	0.88[ASN][1000 genomes]
rs7091809	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7099796	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72637516	0.80[ASN][1000 genomes]
rs72640001	0.91[ASN][1000 genomes]
rs7896766	0.88[ASN][1000 genomes]
rs7905402	0.91[ASN][1000 genomes]
rs7919799	0.92[ASN][1000 genomes]
rs7922788	0.91[ASN][1000 genomes]
rs8181290	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs941997	0.90[AFR][1000 genomes]
rs941998	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs941999	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98032400-98047200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:98034200-98042200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:98036400-98041600	Weak transcription	Liver	Liver
4	chr10:98036400-98044800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:98036400-98045200	Weak transcription	Gastric	stomach
6	chr10:98037000-98040800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:98037400-98041000	Weak transcription	Esophagus	oesophagus
8	chr10:98037600-98040800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:98039200-98046400	Weak transcription	Stomach Mucosa	stomach
10	chr10:98039400-98043000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:98039400-98045200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:98039600-98044800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:98040000-98042000	Enhancers	HMEC	breast
14	chr10:98040000-98045200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:98040200-98043600	Weak transcription	Primary B cells from cord blood	blood
16	chr10:98040400-98041600	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links