Variant report

Variant	rs1075834
Chromosome Location	chr10:98024299-98024300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98024012..98025766-chr10:98077469..98079823,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10509707	0.87[GIH][hapmap];0.86[JPT][hapmap]
rs10882761	0.86[ASN][1000 genomes]
rs10882765	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882767	0.86[JPT][hapmap]
rs11188710	0.82[JPT][hapmap]
rs12411820	0.89[ASN][1000 genomes]
rs12414495	0.89[ASN][1000 genomes]
rs12414529	0.89[ASN][1000 genomes]
rs12569756	0.86[JPT][hapmap]
rs17111536	0.90[ASN][1000 genomes]
rs17111540	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1902704	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2146385	0.84[GIH][hapmap];0.86[JPT][hapmap]
rs2273892	0.82[JPT][hapmap]
rs2861306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2861308	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762093	0.82[ASN][1000 genomes]
rs3762094	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789930	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789933	0.87[ASN][1000 genomes]
rs3789934	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3789939	0.82[JPT][hapmap]
rs3789940	0.82[JPT][hapmap]
rs4917730	0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4919000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919001	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57519557	0.81[ASN][1000 genomes]
rs6584061	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6584064	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs7072251	1.00[CEU][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7076424	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085174	0.89[ASN][1000 genomes]
rs7099796	0.96[ASN][1000 genomes]
rs72637514	0.90[ASN][1000 genomes]
rs72637515	0.90[ASN][1000 genomes]
rs72637516	0.89[ASN][1000 genomes]
rs7894128	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7896766	0.86[JPT][hapmap]
rs7905645	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7919557	0.82[ASN][1000 genomes]
rs7919588	0.85[ASN][1000 genomes]
rs8181290	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9663433	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9664029	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
3	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr10:98015400-98026200	Genic enhancers	Primary B cells from cord blood	blood
5	chr10:98015600-98027000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:98015800-98026200	Weak transcription	Esophagus	oesophagus
7	chr10:98017000-98024400	Enhancers	Stomach Mucosa	stomach
8	chr10:98019600-98025600	Enhancers	Liver	Liver
9	chr10:98019800-98028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:98020000-98029400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:98021000-98029800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
12	chr10:98022400-98026000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:98022600-98026000	Weak transcription	HMEC	breast
14	chr10:98022600-98026800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:98023400-98026000	Weak transcription	Gastric	stomach
16	chr10:98023600-98026000	Weak transcription	Fetal Intestine Small	intestine
17	chr10:98023600-98026000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:98023600-98031800	Weak transcription	Small Intestine	intestine
19	chr10:98023800-98024600	Enhancers	Duodenum Mucosa	Duodenum
20	chr10:98023800-98024600	Enhancers	Placenta	Placenta
21	chr10:98023800-98026200	Weak transcription	Colonic Mucosa	Colon
22	chr10:98023800-98026600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:98023800-98032000	Weak transcription	Spleen	Spleen
24	chr10:98024200-98025600	Weak transcription	Fetal Intestine Large	intestine
25	chr10:98024200-98025600	Weak transcription	Pancreas	Pancrea
26	chr10:98024200-98026200	Weak transcription	Rectal Mucosa Donor 29	rectum

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