Variant report

Variant	rs3789933
Chromosome Location	chr10:98015007-98015008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10509707	0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1075834	0.87[ASN][1000 genomes]
rs10786273	0.82[ASN][1000 genomes]
rs10882761	0.81[ASN][1000 genomes]
rs10882765	0.89[ASN][1000 genomes]
rs10882767	0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10882768	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11188699	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12250473	0.82[ASN][1000 genomes]
rs12257639	0.82[AMR][1000 genomes]
rs12411820	0.96[ASN][1000 genomes]
rs12414495	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12414529	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12569756	0.81[JPT][hapmap]
rs12572610	0.82[EUR][1000 genomes]
rs17111536	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17111540	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1902704	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2069238	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2146385	0.81[JPT][hapmap]
rs2146391	0.82[ASN][1000 genomes]
rs2168732	0.87[ASN][1000 genomes]
rs2861306	0.88[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2861308	0.87[ASN][1000 genomes]
rs3762093	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3762094	0.87[ASN][1000 genomes]
rs3789929	0.89[ASN][1000 genomes]
rs3789930	0.87[ASN][1000 genomes]
rs3789934	0.87[ASN][1000 genomes]
rs41291614	0.84[AMR][1000 genomes]
rs4919000	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4919001	0.87[ASN][1000 genomes]
rs57519557	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6584061	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6584064	0.81[JPT][hapmap]
rs7069190	0.81[ASN][1000 genomes]
rs7072251	0.81[JPT][hapmap]
rs7076424	0.87[ASN][1000 genomes]
rs7078316	0.81[AMR][1000 genomes]
rs7083595	0.85[AMR][1000 genomes]
rs7085174	0.84[ASN][1000 genomes]
rs7091809	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7099796	0.88[ASN][1000 genomes]
rs72637514	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72637515	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72637516	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72640001	0.83[ASN][1000 genomes]
rs7894128	0.85[ASN][1000 genomes]
rs7896766	0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs7905402	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7905645	0.87[ASN][1000 genomes]
rs7919557	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7919799	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7922788	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8181290	0.87[ASN][1000 genomes]
rs941998	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs941999	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9663433	0.87[ASN][1000 genomes]
rs9664029	0.87[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97996400-98029200	Weak transcription	Fetal Stomach	stomach
2	chr10:98002000-98015400	Weak transcription	Esophagus	oesophagus
3	chr10:98005000-98019000	Weak transcription	Colonic Mucosa	Colon
4	chr10:98007200-98018800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:98009400-98016800	Weak transcription	Pancreas	Pancrea
6	chr10:98009600-98015200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:98010000-98017200	Weak transcription	Small Intestine	intestine
8	chr10:98010000-98018000	Weak transcription	Gastric	stomach
9	chr10:98010400-98017000	Weak transcription	Stomach Mucosa	stomach
10	chr10:98010600-98025400	Weak transcription	Fetal Kidney	kidney
11	chr10:98011200-98015400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:98011200-98015400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:98011200-98016800	Weak transcription	Spleen	Spleen
14	chr10:98011200-98018800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:98011200-98019000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:98011400-98017800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:98013200-98016800	Strong transcription	GM12878-XiMat	blood
18	chr10:98013200-98017000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:98013200-98017400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:98013600-98015400	Strong transcription	Primary B cells from cord blood	blood
21	chr10:98014400-98027000	Genic enhancers	Primary B cells from peripheral blood	blood
22	chr10:98014800-98015600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr10:98014800-98015600	Enhancers	H1 Cell Line	embryonic stem cell
24	chr10:98014800-98015600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr10:98014800-98015600	Genic enhancers	Liver	Liver
26	chr10:98014800-98015600	Enhancers	Lung	lung
27	chr10:98014800-98016000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:98014800-98016000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:98014800-98016000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr10:98015000-98015800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:98015000-98016200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr10:98015000-98016800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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