Variant report

Variant	rs11188722
Chromosome Location	chr10:98099578-98099579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10218881	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748671	0.90[ASN][1000 genomes]
rs10786280	1.00[ASN][1000 genomes]
rs10882775	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882779	0.83[ASN][1000 genomes]
rs10882781	0.83[ASN][1000 genomes]
rs11188724	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188725	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188726	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571241	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572329	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1923704	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923706	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146392	0.90[ASN][1000 genomes]
rs2146393	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861574	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901989	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814224	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424609	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085949	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096643	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98095200-98099800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:98095200-98101200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:98097200-98099800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98097400-98099800	Enhancers	Brain Angular Gyrus	brain
5	chr10:98097400-98099800	Weak transcription	Fetal Thymus	thymus
6	chr10:98097800-98099800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:98098000-98101600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:98098400-98101600	Enhancers	Brain Hippocampus Middle	brain
9	chr10:98098400-98101600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:98098600-98099600	Enhancers	Brain Anterior Caudate	brain
11	chr10:98098600-98100200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:98098600-98101200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:98098800-98099800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:98098800-98100800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:98098800-98101200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:98099000-98100400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:98099000-98100800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:98099000-98100800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:98099000-98101200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:98099000-98101200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:98099200-98099600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:98099200-98101600	Enhancers	Brain Substantia Nigra	brain
23	chr10:98099400-98099800	Weak transcription	Dnd41	blood
24	chr10:98099400-98100200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:98099400-98100800	Weak transcription	Thymus	Thymus

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