Variant report

Variant	rs11188726
Chromosome Location	chr10:98104936-98104937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98104317..98106846-chr10:98113043..98115259,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10218881	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748671	0.90[ASN][1000 genomes]
rs10786280	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882775	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882779	0.83[ASN][1000 genomes]
rs10882781	0.83[ASN][1000 genomes]
rs11188722	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188724	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188725	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254238	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571241	1.00[ASN][1000 genomes]
rs12572329	0.99[ASN][1000 genomes]
rs1923704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923706	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146392	0.90[ASN][1000 genomes]
rs2146393	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861574	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901989	1.00[ASN][1000 genomes]
rs3814224	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4424609	1.00[ASN][1000 genomes]
rs7085949	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096643	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98100800-98105000	Strong transcription	Thymus	Thymus
2	chr10:98101400-98105600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:98101400-98105600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:98101600-98105000	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:98101600-98105400	Weak transcription	Brain Angular Gyrus	brain
6	chr10:98101600-98105600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:98101600-98105600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:98103600-98105400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:98104000-98106600	ZNF genes & repeats	Dnd41	blood
10	chr10:98104200-98105200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:98104200-98105800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr10:98104400-98105400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:98104400-98105600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:98104400-98105600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:98104600-98105800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:98104800-98105000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr10:98104800-98105400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:98104800-98105400	Strong transcription	Brain Substantia Nigra	brain
19	chr10:98104800-98105600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:98104800-98105600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr10:98104800-98105800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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