Variant report

Variant	rs10748671
Chromosome Location	chr10:98114174-98114175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98104317..98106846-chr10:98113043..98115259,2	MCF-7	breast:
2	chr10:98107055..98108784-chr10:98114101..98116582,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10218881	0.90[ASN][1000 genomes]
rs10748673	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10786280	0.90[ASN][1000 genomes]
rs10786281	0.81[CEU][hapmap]
rs10786282	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10882775	0.90[ASN][1000 genomes]
rs10882779	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882781	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188722	0.90[ASN][1000 genomes]
rs11188724	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11188725	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11188726	0.90[ASN][1000 genomes]
rs12254238	0.90[ASN][1000 genomes]
rs12268819	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs12571241	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs12572329	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1923702	0.81[JPT][hapmap]
rs1923704	0.90[ASN][1000 genomes]
rs1923706	0.90[ASN][1000 genomes]
rs2146392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146393	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2861574	0.90[ASN][1000 genomes]
rs2901989	0.88[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs3814224	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4424609	0.90[ASN][1000 genomes]
rs4917734	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs7085949	0.90[ASN][1000 genomes]
rs7096643	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98110800-98114200	Enhancers	Brain Angular Gyrus	brain
3	chr10:98111200-98114200	Enhancers	Fetal Intestine Small	intestine
4	chr10:98112800-98116800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:98112800-98116800	Weak transcription	Pancreas	Pancrea
6	chr10:98113400-98114200	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:98113600-98114200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:98113800-98115000	Weak transcription	Brain Substantia Nigra	brain
9	chr10:98114000-98114800	Weak transcription	Thymus	Thymus
10	chr10:98114000-98115000	Weak transcription	Brain Anterior Caudate	brain
11	chr10:98114000-98115000	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:98114000-98115000	Weak transcription	Brain Inferior Temporal Lobe	brain

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