Variant report

Variant	rs11597348
Chromosome Location	chr10:98113803-98113804
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98104317..98106846-chr10:98113043..98115259,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10509708	0.85[CHB][hapmap]
rs10786277	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[ASN][1000 genomes]
rs10786278	1.00[ASN][1000 genomes]
rs10786279	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs10882772	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882773	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[ASN][1000 genomes]
rs10882774	0.96[ASN][1000 genomes]
rs11188704	0.85[CHB][hapmap]
rs11188705	1.00[CHB][hapmap]
rs11188709	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188724	0.81[CEU][hapmap]
rs11188725	0.81[CEU][hapmap]
rs11591467	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593073	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593074	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593503	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598258	0.85[CHB][hapmap]
rs11818942	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12269557	0.85[CHB][hapmap]
rs12571241	0.81[CEU][hapmap]
rs12572329	0.81[CEU][hapmap]
rs12761715	0.85[CHB][hapmap]
rs12766367	0.85[CHB][hapmap]
rs12772674	0.85[CHB][hapmap]
rs12774154	0.85[CHB][hapmap]
rs12779164	0.85[CHB][hapmap]
rs12779564	0.85[CHB][hapmap]
rs17111609	0.85[CHB][hapmap]
rs17111612	0.85[CHB][hapmap]
rs17111614	0.85[CHB][hapmap]
rs17111622	0.85[CHB][hapmap]
rs17111628	0.85[CHB][hapmap]
rs17111733	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923703	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923707	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[ASN][1000 genomes]
rs1923708	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[ASN][1000 genomes]
rs2146393	0.83[CEU][hapmap]
rs2146394	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2154183	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs2181324	1.00[JPT][hapmap]
rs2273891	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2861572	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2901989	0.83[CEU][hapmap]
rs34128907	0.82[AMR][1000 genomes]
rs3789937	0.85[CHB][hapmap]
rs3818313	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917732	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073871	0.85[CHB][hapmap]
rs7077344	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7096879	1.00[ASN][1000 genomes]
rs72811058	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7893551	0.89[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98110800-98114200	Enhancers	Brain Angular Gyrus	brain
3	chr10:98111200-98114200	Enhancers	Fetal Intestine Small	intestine
4	chr10:98111800-98114000	Enhancers	Fetal Intestine Large	intestine
5	chr10:98112400-98114000	Enhancers	Duodenum Mucosa	Duodenum
6	chr10:98112600-98114000	Enhancers	Brain Anterior Caudate	brain
7	chr10:98112800-98116800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:98112800-98116800	Weak transcription	Pancreas	Pancrea
9	chr10:98113000-98114000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:98113000-98114000	Strong transcription	Thymus	Thymus
11	chr10:98113400-98114200	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:98113600-98114000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr10:98113600-98114200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:98113800-98114000	Enhancers	Brain Hippocampus Middle	brain
15	chr10:98113800-98115000	Weak transcription	Brain Substantia Nigra	brain

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