Variant report

Variant	rs2146394
Chromosome Location	chr10:98093757-98093758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98092206..98094114-chr10:98095526..98098374,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10509708	1.00[CHB][hapmap]
rs10736102	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs10736103	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs10786277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786281	0.82[JPT][hapmap]
rs10882772	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10882773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882774	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882778	0.82[JPT][hapmap]
rs11188697	0.82[CHB][hapmap]
rs11188704	1.00[CHB][hapmap]
rs11188705	1.00[CHB][hapmap]
rs11188709	0.85[CEU][hapmap];0.83[ASN][1000 genomes]
rs11188735	0.82[JPT][hapmap]
rs11188736	0.82[JPT][hapmap]
rs11591467	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11593073	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11593074	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11593503	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11597348	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11598258	1.00[CHB][hapmap]
rs11818883	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs11818896	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs12269557	1.00[CHB][hapmap]
rs12761715	1.00[CHB][hapmap]
rs12766367	1.00[CHB][hapmap]
rs12772674	1.00[CHB][hapmap]
rs12774154	1.00[CHB][hapmap]
rs12779164	1.00[CHB][hapmap]
rs12779564	1.00[CHB][hapmap]
rs17111609	1.00[CHB][hapmap]
rs17111612	1.00[CHB][hapmap]
rs17111614	1.00[CHB][hapmap]
rs17111622	1.00[CHB][hapmap]
rs17111628	1.00[CHB][hapmap]
rs17111733	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1923703	1.00[ASN][1000 genomes]
rs1923707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154183	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273891	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2861572	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3789937	1.00[CHB][hapmap]
rs3789942	0.82[CEU][hapmap]
rs3818313	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4917732	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073871	1.00[CHB][hapmap]
rs7077344	0.81[CEU][hapmap];0.83[ASN][1000 genomes]
rs7096879	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72811058	0.94[ASN][1000 genomes]
rs7893551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98089600-98095200	Genic enhancers	Dnd41	blood
2	chr10:98091200-98094800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:98091600-98094800	Enhancers	Fetal Thymus	thymus
4	chr10:98091800-98093800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr10:98091800-98094000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr10:98092000-98094200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:98092000-98095000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:98092200-98094800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:98092200-98096200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:98092600-98097800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:98092800-98094000	Enhancers	Primary T cells from cord blood	blood
12	chr10:98093600-98094400	Genic enhancers	Thymus	Thymus

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