Variant report

Variant	rs7096879
Chromosome Location	chr10:98091639-98091640
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98088637..98090186-chr10:98091371..98093641,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10736102	0.90[AFR][1000 genomes]
rs10736103	0.90[AFR][1000 genomes]
rs10786277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786278	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882772	0.83[ASN][1000 genomes]
rs10882773	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882774	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188709	0.83[ASN][1000 genomes]
rs11591467	0.83[ASN][1000 genomes]
rs11593073	1.00[ASN][1000 genomes]
rs11593074	1.00[ASN][1000 genomes]
rs11593503	1.00[ASN][1000 genomes]
rs11597348	1.00[ASN][1000 genomes]
rs17111733	1.00[ASN][1000 genomes]
rs1923703	1.00[ASN][1000 genomes]
rs1923707	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923708	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146394	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2154183	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2273891	1.00[ASN][1000 genomes]
rs2861572	0.94[ASN][1000 genomes]
rs3818313	1.00[ASN][1000 genomes]
rs4917732	1.00[ASN][1000 genomes]
rs7077344	0.83[ASN][1000 genomes]
rs72811058	0.94[ASN][1000 genomes]
rs7893551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
2	chr10:98089600-98092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:98089600-98092600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:98089600-98095200	Genic enhancers	Dnd41	blood
5	chr10:98091200-98094800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:98091600-98094800	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links