Variant report

Variant	rs34128907
Chromosome Location	chr10:98068852-98068853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98068748-98068856	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98067037..98069492-chr10:98071586..98073914,2	K562	blood:

Variant related genes	Relation type
ENSG00000229418	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10509708	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882772	0.92[ASN][1000 genomes]
rs11188697	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188702	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188704	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188705	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188709	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11591467	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11593073	0.83[AMR][1000 genomes]
rs11593074	0.82[AMR][1000 genomes]
rs11593503	0.83[AMR][1000 genomes]
rs11597348	0.82[AMR][1000 genomes]
rs11598258	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12269557	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12761473	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12761715	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12763059	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12766367	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12772674	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12774154	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779164	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779203	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12779564	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111594	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17111598	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111599	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111603	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111609	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17111612	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111614	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111622	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111628	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1815258	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2181322	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2273891	0.91[AMR][1000 genomes]
rs34125453	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34220987	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34521234	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34943354	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35055142	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35259489	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35388328	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35531390	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35925896	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35933547	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36003947	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789937	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3818313	0.91[AMR][1000 genomes]
rs4550161	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7073871	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71482401	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71482402	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71484204	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484205	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72811058	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7917592	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98064200-98069400	Active TSS	Thymus	Thymus
2	chr10:98066400-98070000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:98066400-98072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:98066600-98071400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:98066800-98069200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:98066800-98071000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:98066800-98072000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:98067000-98072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:98067200-98070400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
12	chr10:98067400-98070400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr10:98067600-98069000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:98067600-98072400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:98067800-98069200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr10:98067800-98071000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:98067800-98071200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:98068000-98069200	Transcr. at gene 5' and 3'	Dnd41	blood
19	chr10:98068000-98070400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:98068000-98070600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:98068400-98069000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:98068400-98070400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:98068600-98071200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:98068800-98069000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr10:98068800-98069000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr10:98068800-98069200	Enhancers	Fetal Kidney	kidney
27	chr10:98068800-98070000	Enhancers	Fetal Lung	lung
28	chr10:98068800-98070000	Enhancers	Right Atrium	heart
29	chr10:98068800-98070200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:98068800-98070400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:98068800-98070400	Enhancers	Fetal Stomach	stomach
32	chr10:98068800-98070400	Enhancers	Rectal Smooth Muscle	rectum
33	chr10:98068800-98070600	Enhancers	Colon Smooth Muscle	Colon
34	chr10:98068800-98070600	Enhancers	Stomach Smooth Muscle	stomach
35	chr10:98068800-98071200	Enhancers	Rectal Mucosa Donor 31	rectum

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