Variant report

Variant	rs34521234
Chromosome Location	chr10:98061525-98061526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:98061449-98062202	MCF-7	breast:	n/a	n/a
2	NR2F2	chr10:98061330-98061784	HepG2	liver:	n/a	n/a
3	FOXA1	chr10:98061400-98061737	HepG2	liver:	n/a	n/a
4	NR2F2	chr10:98061257-98062114	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98054173..98056503-chr10:98059907..98061674,2	K562	blood:

Variant related genes	Relation type
DNTT	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509708	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882772	0.89[ASN][1000 genomes]
rs11188697	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188702	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188704	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188705	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188709	0.89[ASN][1000 genomes]
rs11591467	0.89[ASN][1000 genomes]
rs11598258	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12269557	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12761715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766367	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772674	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774154	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779203	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111594	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17111598	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111599	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111603	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111609	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111612	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111614	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815258	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2181322	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34125453	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34128907	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34220987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34943354	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35055142	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35259489	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35388328	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35531390	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35925896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35933547	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36003947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789937	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550161	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7073871	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482401	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71482402	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484204	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71484205	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72811058	0.81[ASN][1000 genomes]
rs7917592	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98056800-98062800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr10:98057200-98061800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:98057400-98062000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:98057600-98063800	Enhancers	Fetal Thymus	thymus
5	chr10:98058800-98062800	Flanking Active TSS	Dnd41	blood
6	chr10:98059400-98063200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr10:98059600-98064200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:98060000-98063200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:98060000-98066200	Weak transcription	Spleen	Spleen
10	chr10:98060000-98068000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:98060400-98061600	Flanking Active TSS	Thymus	Thymus
12	chr10:98060600-98065800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:98060600-98066000	Weak transcription	Primary B cells from cord blood	blood
14	chr10:98061000-98061800	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:98061200-98062000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:98061200-98062000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:98061200-98062200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:98061200-98066200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:98061400-98061800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:98061400-98062400	Weak transcription	Primary T cells from cord blood	blood
21	chr10:98061400-98067800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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