Variant report

Variant	rs12779203
Chromosome Location	chr10:98057002-98057003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10509708	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882772	0.85[ASN][1000 genomes]
rs11188697	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188702	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188704	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188705	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188709	0.85[ASN][1000 genomes]
rs11591467	0.85[ASN][1000 genomes]
rs11598258	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12269557	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12761473	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12761715	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12763059	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12766367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12772674	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12774154	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779164	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779564	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111594	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17111598	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111609	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111612	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111614	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111622	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17111628	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1815258	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2181322	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34125453	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34128907	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34220987	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34521234	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34943354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35055142	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35259489	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35388328	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35531390	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35925896	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35933547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36003947	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789937	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4550161	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7073871	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71482401	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71482402	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71484204	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71484205	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7917592	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98048600-98058800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:98050600-98059200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98052800-98058400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98053200-98059200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:98055200-98061000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:98055800-98058600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:98055800-98058600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:98055800-98058800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:98055800-98059200	Weak transcription	GM12878-XiMat	blood
10	chr10:98056000-98057200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:98056200-98057200	Enhancers	Dnd41	blood
12	chr10:98056200-98057400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:98056200-98057400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:98056200-98058800	Weak transcription	Primary B cells from cord blood	blood
15	chr10:98056600-98057400	Enhancers	Thymus	Thymus
16	chr10:98056600-98057800	Enhancers	Brain Germinal Matrix	brain
17	chr10:98056800-98059000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr10:98056800-98062800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:98057000-98057600	Genic enhancers	Fetal Thymus	thymus
20	chr10:98057000-98059600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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