Variant report

Variant	rs1815258
Chromosome Location	chr10:98071462-98071463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10509708	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882772	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188697	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188702	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188704	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188705	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188709	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11591467	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11598258	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12269557	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12761473	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12761715	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12763059	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12766367	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12772674	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12774154	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12779164	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12779203	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12779564	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111594	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111598	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111599	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111603	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111609	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17111612	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111614	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111622	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17111628	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2181322	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34125453	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34128907	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34220987	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34521234	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34943354	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35055142	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35259489	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35388328	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35531390	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35925896	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35933547	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36003947	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3789937	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4550161	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7073871	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71482401	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71482402	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71484204	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71484205	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7917592	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98066400-98072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:98066800-98072000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:98067000-98072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:98067200-98076600	Enhancers	Fetal Thymus	thymus
6	chr10:98067600-98072400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:98069600-98072400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:98070400-98071800	Active TSS	Thymus	Thymus
9	chr10:98070400-98072400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:98070400-98079800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:98071000-98079600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:98071000-98080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:98071200-98072000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:98071200-98072000	Enhancers	Dnd41	blood
15	chr10:98071200-98075000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:98071400-98071600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:98071400-98079600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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