Variant report

Variant	rs28613303
Chromosome Location	chr15:73986188-73986189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73537335..73540312-chr15:73984366..73986218,2	K562	blood:
2	chr15:73975160..73977324-chr15:73984548..73987119,2	K562	blood:
3	chr15:73956703..73958906-chr15:73984345..73986661,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11574474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74026241	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74026251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74026253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74026254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-73989000	Weak transcription	Fetal Kidney	kidney
2	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:73979400-73986200	Weak transcription	Psoas Muscle	Psoas
4	chr15:73979400-73986800	Weak transcription	Aorta	Aorta
5	chr15:73979400-73989000	Weak transcription	Fetal Intestine Large	intestine
6	chr15:73979400-73996400	Weak transcription	A549	lung
7	chr15:73980200-73988400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:73980400-73986200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:73980600-73988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73980600-73988400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:73981400-73988000	Weak transcription	Spleen	Spleen
12	chr15:73981600-73986400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:73981600-73987000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
15	chr15:73982400-73986200	Weak transcription	Ovary	ovary
16	chr15:73982600-73990000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:73983600-73986400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr15:73984000-73986600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:73984200-73986200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:73984200-73986400	Weak transcription	NH-A	brain
21	chr15:73984200-73988000	Weak transcription	Brain Substantia Nigra	brain
22	chr15:73984200-73988200	Weak transcription	HUVEC	blood vessel
23	chr15:73984200-73988800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:73984400-73986200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:73984400-73986200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:73984400-73986200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:73984400-73986200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:73984400-73986200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:73984400-73986200	Weak transcription	Fetal Heart	heart
30	chr15:73984400-73986200	Weak transcription	Osteobl	bone
31	chr15:73984400-73986400	Weak transcription	Brain Anterior Caudate	brain
32	chr15:73984400-73986400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:73984400-73986400	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:73984400-73986400	Weak transcription	Esophagus	oesophagus
35	chr15:73984400-73986400	Weak transcription	Fetal Lung	lung
36	chr15:73984400-73986400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:73984400-73986400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:73984400-73986400	Weak transcription	Stomach Mucosa	stomach
39	chr15:73984400-73986600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr15:73984400-73986600	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:73984400-73987600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:73984400-73987800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:73984400-73988000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr15:73984400-73988000	Weak transcription	Brain Germinal Matrix	brain
45	chr15:73984400-73988600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:73984400-73989000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr15:73984600-73986200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:73984600-73986200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:73984600-73986200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:73984600-73986200	Weak transcription	Fetal Brain Female	brain

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