Variant report

Variant	rs74026254
Chromosome Location	chr15:73981852-73981853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73970534..73973218-chr15:73980839..73983743,2	K562	blood:
2	chr15:73935857..73937490-chr15:73980452..73983279,2	MCF-7	breast:
3	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11574474	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74026241	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74026250	0.83[AFR][1000 genomes]
rs74026251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74026253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73977800-73982400	Enhancers	Lung	lung
2	chr15:73978200-73982200	Enhancers	Liver	Liver
3	chr15:73978200-73982200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr15:73978200-73982400	Enhancers	Ovary	ovary
5	chr15:73978400-73982600	Enhancers	HUVEC	blood vessel
6	chr15:73978600-73982200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:73978600-73982200	Enhancers	Colon Smooth Muscle	Colon
8	chr15:73978600-73982200	Enhancers	Placenta	Placenta
9	chr15:73978600-73982400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:73978600-73983600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:73978800-73982000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:73978800-73983600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:73978800-73983600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:73978800-73983800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:73978800-73983800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:73978800-73989000	Weak transcription	Fetal Kidney	kidney
17	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:73979000-73982000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:73979000-73982000	Enhancers	Fetal Muscle Leg	muscle
20	chr15:73979000-73982000	Enhancers	HepG2	liver
21	chr15:73979000-73982400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:73979000-73982800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:73979000-73985400	Enhancers	Adipose Nuclei	Adipose
24	chr15:73979200-73982200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:73979200-73982400	Enhancers	HSMMtube	muscle
26	chr15:73979200-73983400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:73979200-73983800	Weak transcription	Colonic Mucosa	Colon
28	chr15:73979200-73985000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:73979400-73983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:73979400-73983800	Enhancers	NHEK	skin
31	chr15:73979400-73986200	Weak transcription	Psoas Muscle	Psoas
32	chr15:73979400-73986800	Weak transcription	Aorta	Aorta
33	chr15:73979400-73989000	Weak transcription	Fetal Intestine Large	intestine
34	chr15:73979400-73996400	Weak transcription	A549	lung
35	chr15:73979600-73982000	Enhancers	Hela-S3	cervix
36	chr15:73979600-73982400	Enhancers	HMEC	breast
37	chr15:73979600-73982400	Enhancers	HSMM	muscle
38	chr15:73979600-73982600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:73979600-73983000	Weak transcription	Fetal Intestine Small	intestine
40	chr15:73979600-73983400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:73979800-73982000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:73979800-73984200	Enhancers	NH-A	brain
43	chr15:73979800-73984600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:73980000-73983600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:73980200-73983400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:73980200-73983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:73980200-73983800	Weak transcription	Esophagus	oesophagus
48	chr15:73980200-73988400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr15:73980400-73982200	Enhancers	Stomach Smooth Muscle	stomach
50	chr15:73980400-73982400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links