Variant report

Variant	rs28615848
Chromosome Location	chr7:22395254-22395255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11984205	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6955092	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3437848	chr7:22395252-22397800	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22384200-22395800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:22392400-22396200	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr7:22393800-22397000	Active TSS	Brain Anterior Caudate	brain
4	chr7:22394000-22395800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr7:22394200-22397000	Active TSS	Brain Angular Gyrus	brain
6	chr7:22394400-22397600	Active TSS	Duodenum Mucosa	Duodenum
7	chr7:22394600-22395400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:22394800-22397000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:22395000-22395400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr7:22395000-22395400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr7:22395000-22395400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr7:22395000-22395400	Flanking Bivalent TSS/Enh	HepG2	liver
13	chr7:22395000-22395600	Flanking Active TSS	Fetal Intestine Small	intestine
14	chr7:22395000-22396000	Flanking Active TSS	Fetal Thymus	thymus
15	chr7:22395000-22396200	Flanking Active TSS	Liver	Liver
16	chr7:22395000-22396200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
17	chr7:22395000-22397000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:22395000-22397000	Active TSS	Esophagus	oesophagus
19	chr7:22395000-22397000	Active TSS	Fetal Intestine Large	intestine
20	chr7:22395000-22397000	Active TSS	GM12878-XiMat	blood
21	chr7:22395000-22397200	Active TSS	Sigmoid Colon	Sigmoid Colon
22	chr7:22395000-22397600	Active TSS	Brain Cingulate Gyrus	brain
23	chr7:22395200-22395400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
24	chr7:22395200-22395400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr7:22395200-22395400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
26	chr7:22395200-22395400	Enhancers	Primary B cells from cord blood	blood
27	chr7:22395200-22395400	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr7:22395200-22395400	Enhancers	Gastric	stomach
29	chr7:22395200-22395400	Flanking Active TSS	Pancreas	Pancrea
30	chr7:22395200-22395400	Flanking Active TSS	Thymus	Thymus
31	chr7:22395200-22395600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
32	chr7:22395200-22395600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr7:22395200-22395600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
34	chr7:22395200-22395600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr7:22395200-22395600	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
36	chr7:22395200-22395800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr7:22395200-22395800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr7:22395200-22395800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:22395200-22395800	Bivalent Enhancer	Fetal Lung	lung
40	chr7:22395200-22396000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
41	chr7:22395200-22396000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
42	chr7:22395200-22396200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:22395200-22396200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:22395200-22396200	Bivalent Enhancer	Fetal Brain Male	brain
45	chr7:22395200-22396200	Active TSS	Fetal Kidney	kidney
46	chr7:22395200-22396200	Flanking Active TSS	HMEC	breast
47	chr7:22395200-22396200	Flanking Active TSS	NHEK	skin
48	chr7:22395200-22396400	Active TSS	Right Ventricle	heart
49	chr7:22395200-22396800	Bivalent/Poised TSS	Small Intestine	intestine
50	chr7:22395200-22397000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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