Variant report

Variant	rs6955092
Chromosome Location	chr7:22388859-22388860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:22387545..22389615-chr7:22393294..22394919,2	MCF-7	breast:
2	chr7:22377860..22380103-chr7:22388020..22389955,2	K562	blood:
3	chr7:22386483..22389270-chr7:22442751..22444384,2	MCF-7	breast:
4	chr7:22388247..22390670-chr7:22394895..22396584,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136237	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10243405	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11984205	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17146709	0.86[AFR][1000 genomes]
rs28615848	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1792359	chr7:22377636-22391198	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22369400-22394800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:22370200-22390400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:22380000-22392200	Weak transcription	Primary B cells from cord blood	blood
4	chr7:22381800-22390200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:22382000-22390000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:22382000-22390200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:22382000-22390200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:22382800-22389400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:22383000-22395200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:22384200-22395800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:22384800-22395000	Weak transcription	Thymus	Thymus
12	chr7:22385800-22391600	Weak transcription	Fetal Thymus	thymus
13	chr7:22386400-22390000	Weak transcription	Osteobl	bone
14	chr7:22386400-22390200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:22386600-22389400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:22386600-22389600	Weak transcription	Liver	Liver
17	chr7:22386600-22390000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:22386600-22390400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:22386800-22390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:22387600-22389800	Enhancers	K562	blood
21	chr7:22388200-22389400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:22388200-22389400	Enhancers	GM12878-XiMat	blood
23	chr7:22388400-22389400	Weak transcription	Dnd41	blood
24	chr7:22388400-22389600	Weak transcription	HUVEC	blood vessel
25	chr7:22388400-22389800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr7:22388400-22390200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:22388400-22390200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:22388400-22390200	Weak transcription	HMEC	breast
29	chr7:22388400-22390200	Weak transcription	NHEK	skin
30	chr7:22388400-22395000	Weak transcription	Esophagus	oesophagus
31	chr7:22388600-22389000	Weak transcription	Fetal Intestine Large	intestine
32	chr7:22388600-22389400	Weak transcription	Small Intestine	intestine
33	chr7:22388600-22390200	Enhancers	HepG2	liver
34	chr7:22388600-22390400	Weak transcription	Stomach Mucosa	stomach
35	chr7:22388600-22391400	Weak transcription	Pancreas	Pancrea
36	chr7:22388800-22389400	Weak transcription	Fetal Intestine Small	intestine

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