Variant report

Variant	rs2861697
Chromosome Location	chr2:67849794-67849795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10490719	0.84[ASN][1000 genomes]
rs10490720	0.84[ASN][1000 genomes]
rs10490721	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1107595	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11126137	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11126139	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11126140	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11679082	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11680000	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11680926	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11686555	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11693956	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12328339	0.83[ASN][1000 genomes]
rs12616261	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12619942	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12621286	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12624204	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17033787	0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17033788	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2270342	0.88[ASN][1000 genomes]
rs2270343	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2270344	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2270346	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2270348	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2861641	0.86[ASN][1000 genomes]
rs2861643	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2861650	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2861651	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2861679	0.93[ASN][1000 genomes]
rs2861688	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2861692	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2861693	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2861696	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2861699	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2902020	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3885079	0.85[ASN][1000 genomes]
rs4233940	0.85[ASN][1000 genomes]
rs4368311	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4444509	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4591326	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4671185	0.85[ASN][1000 genomes]
rs4671186	1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4671187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4671188	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4671189	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4671193	0.97[ASN][1000 genomes]
rs4671808	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60735969	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61004148	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6546323	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs723712	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72621572	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72621573	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72621574	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9309400	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2861697	C2orf42	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67847200-67852400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:67849000-67849800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:67849400-67849800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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