Variant report

Variant	rs4671193
Chromosome Location	chr2:67846288-67846289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10490719	0.81[ASN][1000 genomes]
rs10490720	0.81[ASN][1000 genomes]
rs10490721	0.89[ASN][1000 genomes]
rs1107595	0.88[ASN][1000 genomes]
rs11126137	0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs11126139	0.86[ASN][1000 genomes]
rs11126140	0.87[ASN][1000 genomes]
rs11679082	0.89[ASN][1000 genomes]
rs11680000	0.91[ASN][1000 genomes]
rs11680926	0.93[ASN][1000 genomes]
rs11686555	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11693956	0.90[ASN][1000 genomes]
rs12328339	0.80[ASN][1000 genomes]
rs12616261	0.87[ASN][1000 genomes]
rs12619942	0.86[ASN][1000 genomes]
rs12621286	0.81[ASN][1000 genomes]
rs12624204	0.87[ASN][1000 genomes]
rs17033787	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17033788	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2270342	0.87[ASN][1000 genomes]
rs2270343	0.87[ASN][1000 genomes]
rs2270344	0.87[ASN][1000 genomes]
rs2270346	0.87[ASN][1000 genomes]
rs2270348	0.88[ASN][1000 genomes]
rs2861641	0.84[ASN][1000 genomes]
rs2861643	0.86[ASN][1000 genomes]
rs2861650	0.88[ASN][1000 genomes]
rs2861651	0.89[ASN][1000 genomes]
rs2861679	0.91[ASN][1000 genomes]
rs2861688	0.91[ASN][1000 genomes]
rs2861692	0.90[ASN][1000 genomes]
rs2861693	0.95[ASN][1000 genomes]
rs2861696	0.95[ASN][1000 genomes]
rs2861697	0.97[ASN][1000 genomes]
rs2861699	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2902020	0.91[ASN][1000 genomes]
rs3885079	0.82[ASN][1000 genomes]
rs4233940	0.82[ASN][1000 genomes]
rs4368311	0.90[ASN][1000 genomes]
rs4444509	0.89[ASN][1000 genomes]
rs4591326	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4671185	0.82[ASN][1000 genomes]
rs4671186	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4671187	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4671188	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4671189	0.89[ASN][1000 genomes]
rs4671808	0.89[ASN][1000 genomes]
rs60735969	0.85[ASN][1000 genomes]
rs61004148	0.89[ASN][1000 genomes]
rs6546323	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6721459	0.91[AFR][1000 genomes]
rs723712	0.89[ASN][1000 genomes]
rs72621572	0.88[ASN][1000 genomes]
rs72621573	0.93[ASN][1000 genomes]
rs72621574	0.91[ASN][1000 genomes]
rs7579880	0.87[AFR][1000 genomes]
rs7598674	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7598832	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9309400	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67840200-67847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:67844600-67846600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67844600-67849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:67845600-67849000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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