Variant report

Variant	rs6721459
Chromosome Location	chr2:67852836-67852837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17033785	1.00[JPT][hapmap]
rs17033788	0.81[JPT][hapmap]
rs17033967	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17033981	0.80[ASN][1000 genomes]
rs2861679	0.84[AMR][1000 genomes]
rs2861699	0.96[AFR][1000 genomes]
rs4671191	0.80[ASN][1000 genomes]
rs4671193	0.91[AFR][1000 genomes]
rs6546323	0.94[AFR][1000 genomes]
rs7579880	0.80[AFR][1000 genomes]
rs7598674	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7598832	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67852200-67854400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:67852400-67853000	Enhancers	HSMMtube	muscle
3	chr2:67852400-67853200	Enhancers	Adipose Nuclei	Adipose
4	chr2:67852400-67853800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:67852400-67854200	Enhancers	HMEC	breast
6	chr2:67852400-67854600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:67852400-67854600	Enhancers	NHDF-Ad	bronchial
8	chr2:67852400-67855000	Enhancers	HSMM	muscle
9	chr2:67852600-67853000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:67852600-67853200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:67852600-67853600	Enhancers	Osteobl	bone
12	chr2:67852600-67853800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:67852800-67853000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:67852800-67853000	Enhancers	NH-A	brain
15	chr2:67852800-67853400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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