Variant report

Variant	rs28619030
Chromosome Location	chr14:79438260-79438261
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10136690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140529	1.00[EUR][1000 genomes]
rs10145952	1.00[EUR][1000 genomes]
rs17094087	1.00[EUR][1000 genomes]
rs17108387	1.00[EUR][1000 genomes]
rs17108455	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108499	1.00[EUR][1000 genomes]
rs28539806	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57057681	1.00[EUR][1000 genomes]
rs61291300	1.00[EUR][1000 genomes]
rs7158612	1.00[EUR][1000 genomes]
rs73317254	1.00[EUR][1000 genomes]
rs73317257	1.00[EUR][1000 genomes]
rs73317263	1.00[EUR][1000 genomes]
rs73320804	1.00[EUR][1000 genomes]
rs73320805	1.00[EUR][1000 genomes]
rs73321613	1.00[EUR][1000 genomes]
rs73321687	1.00[EUR][1000 genomes]
rs73325334	1.00[EUR][1000 genomes]
rs73332961	1.00[EUR][1000 genomes]
rs8005448	1.00[EUR][1000 genomes]
rs8005492	1.00[EUR][1000 genomes]
rs8011912	1.00[EUR][1000 genomes]
rs8011993	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79434800-79441400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:79436000-79440600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:79436200-79438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:79436400-79440800	Weak transcription	NH-A	brain
5	chr14:79437200-79439400	Weak transcription	HUVEC	blood vessel
6	chr14:79437400-79445600	Weak transcription	Brain Germinal Matrix	brain

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