Variant report

Variant	rs28623577
Chromosome Location	chr8:69538666-69538667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10087162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10088350	1.00[AMR][1000 genomes]
rs11986585	1.00[AMR][1000 genomes]
rs16934921	1.00[AMR][1000 genomes]
rs16934922	1.00[AMR][1000 genomes]
rs28373295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28506939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28719791	1.00[AMR][1000 genomes]
rs28810371	1.00[AMR][1000 genomes]
rs73276580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv890984	chr8:69482825-69556111	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv890985	chr8:69532253-69586034	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69532800-69544800	Weak transcription	Aorta	Aorta
2	chr8:69536600-69540400	Enhancers	HSMM	muscle
3	chr8:69537000-69538800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:69537000-69541600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:69537000-69541600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:69537000-69541800	Enhancers	NHDF-Ad	bronchial
7	chr8:69538000-69539200	Weak transcription	NHLF	lung
8	chr8:69538000-69539400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:69538000-69539400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:69538000-69539400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:69538000-69539400	Weak transcription	Osteobl	bone
12	chr8:69538000-69541000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:69538000-69544800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:69538000-69550400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:69538400-69539400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:69538400-69539400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:69538600-69539000	Weak transcription	HMEC	breast
18	chr8:69538600-69539000	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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