Variant report

Variant	rs16934921
Chromosome Location	chr8:69613999-69614000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10087162	1.00[AMR][1000 genomes]
rs10088350	1.00[AMR][1000 genomes]
rs10110350	1.00[YRI][hapmap]
rs11986585	0.82[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994451	1.00[YRI][hapmap]
rs16919100	0.86[YRI][hapmap]
rs16934911	1.00[YRI][hapmap]
rs16934922	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865442	0.82[YRI][hapmap]
rs28373295	1.00[AMR][1000 genomes]
rs28506939	1.00[AMR][1000 genomes]
rs28623577	1.00[AMR][1000 genomes]
rs28719791	1.00[AMR][1000 genomes]
rs28810371	1.00[AMR][1000 genomes]
rs6986698	1.00[YRI][hapmap]
rs73276580	1.00[AMR][1000 genomes]
rs9657036	1.00[YRI][hapmap]
rs9987201	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69611800-69622400	Weak transcription	Aorta	Aorta
2	chr8:69612200-69615600	Weak transcription	HMEC	breast
3	chr8:69612400-69615600	Weak transcription	Hela-S3	cervix
4	chr8:69612800-69616000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:69613000-69615600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:69613000-69618200	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:69613000-69621000	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links