Variant report
| Variant | rs16934911 |
|---|---|
| Chromosome Location | chr8:69602460-69602461 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:59092478..59095323-chr8:69601494..69603790,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10087162 | 1.00[AMR][1000 genomes] |
| rs10088350 | 1.00[AMR][1000 genomes] |
| rs10110350 | 1.00[YRI][hapmap] |
| rs11986585 | 0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11994451 | 1.00[YRI][hapmap] |
| rs16919100 | 0.86[YRI][hapmap] |
| rs16934921 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16934922 | 1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1865442 | 0.82[YRI][hapmap] |
| rs28373295 | 1.00[AMR][1000 genomes] |
| rs28506939 | 1.00[AMR][1000 genomes] |
| rs28623577 | 1.00[AMR][1000 genomes] |
| rs28719791 | 1.00[AMR][1000 genomes] |
| rs28810371 | 1.00[AMR][1000 genomes] |
| rs6986698 | 1.00[YRI][hapmap] |
| rs73276580 | 1.00[AMR][1000 genomes] |
| rs9657036 | 1.00[YRI][hapmap] |
| rs9987201 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948687 | chr8:69041121-69642540 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv831349 | chr8:69555461-69733515 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
